Evidence map›Paper›PMID 40696442›Full record

ArticlePlant methods2025

A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach.

Najla Ksouri, Gerardo Sánchez, Carolina Font I Forcada, Bruno Contreras-Moreira, Yolanda Gogorcena

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Plant methods, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Najla KsouriGroup of Genomics of Fruit Trees and Grapevine, Department of Pomology, Estación Experimental de Aula Dei-Consejo Superior de Investigaciones Científicas, Avenida de Montañana 1005, 50059, Zaragoza, Spain.
Gerardo SánchezBiotechnology Lab, Estación Experimental Agropecuaria (EEA) San Pedro, INTA, Ruta N°9 Km 170, B2930, San Pedro, Argentina.
Carolina Font I ForcadaDepartment of Pomology, Estación Experimental de Aula Dei-Consejo Superior de Investigaciones Científicas, Avenida de Montañana 1005, 50059, Zaragoza, Spain.
Bruno Contreras-Moreira *Laboratory of Computational and Structural Biology, Department of Genetics and Plant Production, Estación Experimental de Aula Dei-Consejo Superior de Investigaciones Científicas, Avenida de Montañana 1005, 50059, Zaragoza, Spain.
Yolanda Gogorcena *Group of Genomics of Fruit Trees and Grapevine, Department of Pomology, Estación Experimental de Aula Dei-Consejo Superior de Investigaciones Científicas, Avenida de Montañana 1005, 50059, Zaragoza, Spain. aoiz@eead.csic.es.

Funding

CSIC 2020AEP119Government of Aragón A09_20RGovernment of Aragón A09_23RGovernment of Aragón A10_20RSpanish Research Agency AGL2014-52063-RSpanish Research Agency AGL2017-83358-RSpanish Research Agency PID2023-146749OB-I00
6 · The paper itself

Abstract

Improving peach cultivars with superior traits is a primary objective of breeding initiatives. In this study, we aimed to elucidate the genetic basis of key agronomic and fruit-related traits using a reproducible ddRAD-seq protocol applied to a discovery panel of 90 peach accessions. Our customized workflow (available at https://github.com/najlaksouri/GWAS-Workflow ) integrates three variant callers and tests up to seven models to perform a robust genome-wide association analysis (GWAS). This approach produced 13,045 high-confidence SNPs and identified Blink as the most suitable model, effectively balancing false positive and negative associations. A total of 16 significant associations signals were unveiled for six highly heritable traits (H

Indexed as

Fruit-related traitsHaplotype blocksLead SNPLinkage disequilibriumPrime candidate genesPrunus persica

Identifiers

PMID40696442
PMCPMC12285099

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.