Evidence map›Paper›PMID 40714929›Full record

ArticleClinical and translational medicine2025

A robust machine learning model based on ribosomal-subunit-derived piRNAs for diagnostic potential of nonsmall cell lung cancer across multicentre, large-scale of sequencing data.

Zitong Gao, Masaki Nasu, Gehan Devendra, Ayman A Abdul-Ghani, Anthony J Herrera, Jeffrey A Borgia, Christopher W Seder, Donna Lee Kuehu, Zhuokun Feng, Yu Chen and 8 more

Abstract readMulticenter Study
In one paragraph

Article in Clinical and translational medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Zitong GaoDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.ORCID 0000-0001-5689-6043
Masaki NasuDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Gehan DevendraDepartment of Medicine, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Ayman A Abdul-GhaniCardiothoracic Surgery, The Queen's Medical Center, Honolulu, Honolulu, Hawai'i, USA.
Anthony J HerreraInterventional Radiology, The Queen's Medical Center, Honolulu, Hawai'i, USA.
Jeffrey A BorgiaDepartments of Anatomy & Cell Biology and Pathology, RUSH University Cancer Center, Chicago, Illinois, USA.
Christopher W SederCardiothoracic Residency Program, RUSH University, Chicago, Illinois, USA.
Donna Lee KuehuDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Zhuokun FengDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Yu ChenDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Ting GongDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Zao ZhangHospitalist Medicine, The Queen's Medical Center, Honolulu, Hawai'i, USA.
Owen ChanPathology Core Shared Resource, University of Hawaii Cancer Center, Honolulu, Hawai'i, USA.
Hua YangDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Jianhua YuInstitute for Precision Cancer Therapeutics and Immuno-Oncology, Chao Family Comprehensive Cancer Center, University of California, Irvine, California, USA.
Yuanyuan FuDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.
Lang WuPacific Center for Genome Research, University of Hawaii Cancer Center, Honolulu, Hawai'i, USA.ORCID 0000-0001-9938-3627
Youping DengDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, Hawai'i, USA.ORCID 0000-0002-5951-8213

Funding

AIM-AHEAD Coordinating Center - All Four CoresOT2OD032581 · OD · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI Paul Avillach, Bettina M. Beech · 2021 to 2026
$168.7M
UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Peter R Hoffmann · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Lee Ellen Buenconsejo-Lum, Jerris Robert Hedges · 2017 to 2026
$59.5M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI JOHN Alan SHEPHERD · 1996 to 2026
$56.2M
Urgent Competitive Revision to Existing NIH Grants and Cooperative Agreements (Urgent Supplement - Clinical Trial Optional)U24MD015970 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI CHANG, SANDRA PERREIRA, OFILI, ELIZABETH O. · 2020 to 2024
$17.6M
Tracking and Evaluation CoreU54GM138062 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI GOEBERT, DEBORAH A. · 2021 to 2025
$15.5M
Selenium Metabolism in the Heart: Impact of High Fructose and Low SeleniumP20GM139753 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Marla J Berry · 2022 to 2026
$13.3M
Pacific Center for Genome ResearchU54HG013243 · NHGRI · UNIVERSITY OF HAWAII AT MANOA · PI Alexandra Margaret Lynn Binder, Youping Deng · 2023 to 2026
$10.8M
Small Grants ProgramP30GM114737 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI NERURKAR, VIVEK RAMCHANDRA · 2015 to 2022
$8.1M
Profiling genome-wide circulating ncRNAs for the early detection of lung cancerR01CA223490 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING · 2018 to 2022
$3.1M
Circulating lipid and miRNA markers for early detection of breast cancer among women with abnormal mammogramsR01CA230514 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING · 2019 to 2023
$2.8M
The Hawaii Advanced Training in Artificial Intelligence for Precision Nutrition Science Research (AIPrN)T32DK137523 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI Youping Deng, RACHEL NOVOTNY · 2023 to 2026
$1.7M
NCI NIH HHS P30 CA071789NCI NIH HHS R01 CA223490NCI NIH HHS R01 CA230514NHGRI NIH HHS U54 HG013243NHGRI NIH HHS UE5 HG013826NIDDK NIH HHS T32 DK137523NIGMS NIH HHS P20 GM103466NIGMS NIH HHS P20 GM139753NIGMS NIH HHS P30 GM114737NIGMS NIH HHS U54 GM138062NIH HHS 1OT2OD032581-02-824NIH HHS 1OT2OD032581-02-997NIH HHS 1OT2OD032581-02-PP90YNIH HHS 3OT2OD032581-01S5-895NIH HHS OT2 OD032581NIH HHS OT2OD032581NIH HHS P20GM103466NIH HHS P20GM139753NIH HHS P30CA071789NIH HHS P30GM114737NIH HHS R01CA223490NIH HHS R01CA230514NIH HHS RCC-004UHI-PilotNIH HHS T32DK137523NIH HHS U24MD015970NIH HHS U54GM138062NIH HHS U54HG013243NIH HHS U54MD007601NIH HHS UE5HG013826NIMHD NIH HHS U24 MD015970NIMHD NIH HHS U54 MD007601
6 · The paper itself

Abstract

Nonsmall cell lung cancer (NSCLC) is a lethal cancer and lacks robust biomarkers for noninvasive clinical diagnosis. Detecting NSCLC at the early stage can decrease the mortality rate and minimise harm caused by various treatments. We curated 2050 samples from public tissue and plasma datasets including both invasive and noninvasive types, then supplemented with in-house pooled plasma and exosome samples. Eleven independent transcriptome datasets were utilised to develop a new machine learning model by integrating PIWI-interacting RNA (piRNA) to predict NSCLC. Five piRNA signatures derived from ribosomal subunits identified to be tumour-specific exhibited robust diagnostic ability and were combined into a piRNA-Based Tumour Probability Index (pi-TPI) risk evaluation model. pi-TPI effectively distinguished NSCLC patients from healthy individuals and showed efficacy in identifying early-stage cancers with Area under the ROC Curve (AUC) values over .80. Plasma cohorts exhibited the diagnosis efficacy of pi-TPI with an AUC value of .85. Experimental exosomal data enhances the accuracy of diagnosing noncancerous, benign, and cancer cases. The pi-TPI marker in the noncancer/cancer subgroup exhibited superior predictive performance with an AUC value of .96. These findings underscore the significant clinical potential of the five piRNA signatures as a powerful diagnostic tool for NSCLC, particularly of noninvasive cancer diagnostics.

Indexed as

Carcinoma, Non-Small-Cell LungLung NeoplasmsMachine LearningRNA, Small InterferingBiomarkers, TumorFemaleHumansMalePiwi-Interacting RNABiomarkers, TumorPiwi-Interacting RNARNA, Small Interferingmachine learningnoninvasive diagnosisnonsmall cell lung cancerPIWI‐interacting RNAsmall noncoding RNA

Identifiers

PMID40714929
PMCPMC12410371

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.