Evidence mapPaperPMID 40722249Full record

ArticleJPEN. Journal of parenteral and enteral nutrition2025

Small intestinal bacterial overgrowth and dysbiosis in children with intestinal failure: A descriptive cohort study.

Johannes Hilberath, Andreas Busch, Ulrich Schoppmeier, Kristina Schmauder, Philipp Oberhettinger, Matthias Marschal, Christoph Slavetinsky, Ekkehard Sturm, Silke Peter, Paul D'Alvise

Abstract read
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Article in JPEN. Journal of parenteral and enteral nutrition, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Johannes HilberathPediatric Gastroenterology and Hepatology, University Children's Hospital Tübingen, Tübingen, Germany.ORCID https://orcid.org/0009-0005-0055-7452
Andreas BuschPediatric Gastroenterology and Hepatology, Children's Hospital Princess Margaret Darmstadt, Darmstadt, Germany.
Ulrich SchoppmeierInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Kristina SchmauderInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Philipp OberhettingerInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Matthias MarschalInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Christoph SlavetinskyPediatric Surgery and Urology, University Children's Hospital Tübingen, Tübingen, Germany.
Ekkehard SturmPediatric Gastroenterology and Hepatology, University Children's Hospital Tübingen, Tübingen, Germany.
Silke PeterInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.
Paul D'AlviseInstitute of Medical Microbiology and Hygiene, University Hospital Tübingen, Tübingen, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSmall intestinal bacterial overgrowth (SIBO) is a clinical and diagnostic challenge in pediatric intestinal failure. This study aimed to assess SIBO and dysbiosis in children with intestinal failure and to analyze clinical characteristics as well as cultural and metagenomic sequencing results from different sampling methods.

methodsDescriptive, single-center cohort study in intestinal failure patients with prospective collection of intraluminal aspirate, epithelial brush swab, mucosal biopsy, and small bowel stoma stool for SIBO diagnosis, defined as ≥10

resultsForty-four children with intestinal failure were analyzed (median age 58 months; female 48%; short bowel syndrome 70%). Sixty-six percent of samples were positive for SIBO. In 93%, all three endoscopic sampling methods showed congruent results. SIBO-positive cases were associated (P < 0.05) with small bowel dilatation, proton pump inhibitor use, intestinal inflammation, elevated direct bilirubin and hepatocellular enzyme levels, and a history of liver fibrosis and central venous catheter infections. Metagenomic sequencing revealed microbial dysbiosis in intestinal failure patients, with SIBO-positive cases showing higher microbial reads, lower alpha diversity, and increased abundance of Enterobacteriaceae and enteric anaerobes.

conclusionSIBO and dysbiosis are common in children with intestinal failure and associated with liver injury, central line-associated bloodstream infections, and intestinal inflammation. Cultural diagnosis of SIBO using mucosal biopsies or brush swabs are alternatives to small bowel aspirates. Metagenomic sequencing is feasible, and high microbial read numbers are indicative of SIBO.

Indexed as

DysbiosisGastrointestinal MicrobiomeIntestinal FailureIntestine, SmallBacteriaChildChild, PreschoolCohort StudiesFecesFemaleHumansInfantMaleProspective StudiesShort Bowel Syndromeintestinal dysbiosisintestinal failurenext‐generation sequencingsmall intestinal bacterial overgrowth

Identifiers

PMID40722249
PMCPMC12581465

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.