Evidence map›Paper›PMID 40723332›Full record

ArticleBiology2025

Phylogenetic Analysis of the Mpox Virus in Sub-Saharan Africa (2022-2024).

Millicent Ochieng, Daniel Kiboi, Carolyne Nasimiyu, Eric Osoro, Dorcus C A Omoga, Josiah O Kuja

Abstract read
In one paragraph

Article in Biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Mpox and the one health approach.Dialogues in health · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Millicent OchiengPaul G. Allen School for Global Health-Kenya, College of Veterinary Medicine, Washington State University, Nairobi 00200, Kenya.ORCID 0009-0006-2669-5949
Daniel KiboiDepartment of Biochemistry, School of Biomedical Sciences, Jomo Kenyatta University of Agriculture and Technology, P.O. Box 62000-00200, Nairobi 00200, Kenya.
Carolyne NasimiyuPaul G. Allen School for Global Health-Kenya, College of Veterinary Medicine, Washington State University, Nairobi 00200, Kenya.ORCID 0000-0002-7559-3109
Eric OsoroPaul G. Allen School for Global Health-Kenya, College of Veterinary Medicine, Washington State University, Nairobi 00200, Kenya.
Dorcus C A OmogaDirectorate of Veterinary Services, Nairobi 00100, Kenya.ORCID 0000-0003-1624-5283
Josiah O KujaPaul G. Allen School for Global Health-Kenya, College of Veterinary Medicine, Washington State University, Nairobi 00200, Kenya.ORCID 0000-0002-3202-9540

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mpox, caused by the Mpox virus (MPXV), is a re-emerging zoonotic disease in the Poxviridae family. Since 2022, sub-Saharan Africa has experienced recurrent outbreaks, with the Democratic Republic of the Congo (DRC) accounting for 96% of the 567 confirmed cases reported in the African region by the World Health Organization as of June 2024. Despite MPXV's endemic presence, its genomic diversity and evolutionary dynamics remain poorly characterized. We analyzed 270 MPXV genomes from 13 sub-Saharan African countries (2022-2024), representing the most geographically comprehensive regional dataset from the outbreak period. Phylogenetic analysis identified two geographically distinct clades: Clade I (East/Central Africa) and Clade II (West/Southern Africa). A marked disparity in APOBEC3-associated mutations was observed, with Clade IIb exhibiting significantly higher enrichment than Clade I, suggesting clade-specific host adaptation pressures. These mutations predominantly target genes involved in immune evasion and replication. Preliminary functional predictions indicated that selected missense mutations may impact on protein stability, underscoring the need for further experimental validation. Our findings provide the first pan-sub-Saharan analysis of MPXV clade divergence and reinforce the importance of sustained, regionally informed genomic surveillance to monitor viral evolution and guide outbreak response strategies across Africa.

Indexed as

APOBEC3 mutationsgenetic diversityimmune evasionMpox virusMPXV evolutionphylogeneticsprotein stability

Identifiers

PMID40723332
PMCPMC12292466

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.