Evidence map›Paper›PMID 40725077›Full record

ArticleInternational journal of molecular sciences2025

Proteomic Analysis of CHIKV-nsP3 Host Interactions in Liver Cells Identifies Novel Interacting Partners.

Nimisha Mishra, Yash Chaudhary, Sakshi Chaudhary, Anjali Singh, Priyanshu Srivastava, Sujatha Sunil

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Nimisha MishraVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Yash ChaudharyVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Sakshi ChaudharyVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Anjali SinghVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.
Priyanshu SrivastavaVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.ORCID 0000-0002-1635-4490
Sujatha SunilVector Borne Disease Group, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India.

Funding

International Centre for Genetic Engineering and Biotechnology Core Fund
6 · The paper itself

Abstract

Chikungunya virus (CHIKV), a mosquito-borne alphavirus, has re-emerged, causing widespread outbreaks and a significant clinical burden. Despite advances in virology, the molecular mechanisms governing CHIKV's interaction with host cells remain poorly understood. In this study, we aimed to identify novel host protein interactors of the CHIKV nonstructural protein 3 (nsP3), a critical component of the viral replication complex, using mass spectrometry-based proteomic profiling in liver-derived Huh7 cells. Co-immunoprecipitation followed by LC-MS/MS identified a wide array of host proteins associated with nsP3, revealing 52 proteins classified as high-confidence (FDR of 1%, and unique peptides > 2) CHIKV-specific interactors. A bioinformatic analysis using STRING and Cytoscape uncovered interaction networks enriched in metabolic processes, RNA processing, translation regulation, cellular detoxification, stress responses, and immune signaling pathways. A subcellular localization analysis showed that many interactors reside in the cytosol, while others localize to the nucleus, nucleolus, and mitochondria. Selected novel host protein interactions were validated through co-immunoprecipitation and immunofluorescence assays. Our findings provide new insights into the host cellular pathways hijacked by CHIKV and highlight potential targets for therapeutic intervention. This is the first report mapping direct nsP3-host protein interactions in Huh7 cells during CHIKV infection.

Indexed as

Chikungunya virusHepatocytesHost-Pathogen InteractionsLiverProteomicsViral Nonstructural ProteinsCell LineCell Line, TumorHumansProtein Interaction MapsProteomeTandem Mass SpectrometryProteomeViral Nonstructural Proteinschikungunya virus (CHIKV)Huh7 cellsnonstructural protein 3proteomevirus–host interactions

Identifiers

PMID40725077
PMCPMC12294820

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.