Evidence map›Paper›PMID 40736079›Full record

ArticleG3 (Bethesda, Md.)2025

The chromosome-level genome assembly of the slug Deroceras laeve facilitates its use as a comparative model of regeneration.

Jerónimo R Miranda-Rodríguez, Javan Okendo, Wilbert Gutiérrez-Sarmiento, Tobiáš Ber, Josef Pasulka, Kateryna Nemesh, Aranza Torrado-Tapias, Emilio Ortiz-Ávila, Obed Ramírez-Sánchez, Carlos Lozano-Flores and 5 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jerónimo R Miranda-RodríguezDepartment of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, Querétaro 76230, México.ORCID 0000-0002-2775-6719
Javan OkendoTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892, United States.ORCID 0000-0001-8218-5448
Wilbert Gutiérrez-SarmientoDepartment of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, Querétaro 76230, México.ORCID 0000-0002-9139-7570
Tobiáš BerLaboratory of Epigenetic Regulations, Institute of Molecular Genetics of the Czech Academy of Sciences, 142 20 Prague 4, Czech Republic.ORCID 0009-0008-4400-5213
Josef PasulkaLaboratory of Epigenetic Regulations, Institute of Molecular Genetics of the Czech Academy of Sciences, 142 20 Prague 4, Czech Republic.
Kateryna NemeshLaboratory of Epigenetic Regulations, Institute of Molecular Genetics of the Czech Academy of Sciences, 142 20 Prague 4, Czech Republic.ORCID 0009-0009-7853-1630
Aranza Torrado-TapiasTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892, United States.
Emilio Ortiz-ÁvilaDepartment of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, Querétaro 76230, México.
Obed Ramírez-SánchezCINVESTAV Unidad Irapuato, Irapuato, Guanajuato 36821, México.
Carlos Lozano-FloresDepartment of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, Querétaro 76230, México.
Luis F Hernández-RamírezCINVESTAV Unidad Irapuato, Irapuato, Guanajuato 36821, México.ORCID 0009-0004-4385-0555
Maribel Hernández-RosalesCINVESTAV Unidad Irapuato, Irapuato, Guanajuato 36821, México.
Petr SvobodaLaboratory of Epigenetic Regulations, Institute of Molecular Genetics of the Czech Academy of Sciences, 142 20 Prague 4, Czech Republic.
Shawn M BurgessTranslational and Functional Genomics Branch, National Human Genome Research Institute, Bethesda, MD 20892, United States.ORCID 0000-0003-1147-0596
Alfredo Varela-EchavarríaDepartment of Developmental Neurobiology and Neurophysiology, Instituto de Neurobiología, Universidad Nacional Autónoma de México (UNAM), Querétaro, Querétaro 76230, México.

Funding

DGAPA-UNAM IA206324DGAPA-UNAM IN211322e-INFRA CZ project for Computational resources 90254ELIXIR-CZ 90255Ministry of Education, Youth and Sports (MEYS) of the Czech Republic ERC CZ LL2411NHGRI NIH HHS ZIAHG200386-06SECIHTI CB-2015-254206SECIHTI CBF2023-2024-834
6 · The paper itself

Abstract

The genome of the land slug Deroceras laeve was sequenced, assembled up to the chromosome level, and annotated for non-coding RNAs and protein-coding genes. Due to the small size of this pulmonate species, ease of laboratory culture, cosmopolitan distribution, as well as recently released anatomical and histological resources, this genomic resource creates new opportunities for the investigation of the largely unexplored mechanisms of regeneration in mollusks. Moreover, it also makes this slug an attractive model for functional genomics and evolutionary biology.

Indexed as

ChromosomesGastropodaGenomeRegenerationAnimalsGenomicsMolecular Sequence Annotationcognate chromosomesGenome AssemblyHi-CmolluskPacBioStylommatophora

Identifiers

PMID40736079
PMCPMC12506671

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.