Evidence map›Paper›PMID 40739794›Full record

ArticleTransfusion2025

Genetic variants in the CD59 gene: An exploratory study of large genome databases.

Kshitij Srivastava, Thomas Christopher Recupero, Willy Albert Flegel

Abstract read
In one paragraph

Article in Transfusion, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Kshitij SrivastavaDepartment of Transfusion Medicine, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.ORCID https://orcid.org/0000-0002-3658-0815
Thomas Christopher RecuperoDepartment of Transfusion Medicine, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.ORCID https://orcid.org/0009-0004-1202-4824
Willy Albert FlegelDepartment of Transfusion Medicine, NIH Clinical Center, National Institutes of Health, Bethesda, Maryland, USA.ORCID https://orcid.org/0000-0002-1631-7198

Funding

Laboratory Services Section, Department of Transfusion Medicine Core ReportZICCL002128 · CLC · CLINICAL CENTER · PI FLEGEL, WILLY · 2020 to 2025
$0k
Intramural NIH HHS ZIC CL002128NIH Clinical Center RASCL727301
6 · The paper itself

Abstract

backgroundCD59 is a GPI-anchored glycoprotein on the surface of many cell types. It inhibits the assembly of the membrane attack complex, thus preventing complement-mediated cell lysis. Lack of a functional CD59 protein causes recurrent ischemic strokes, neuropathy, and chronic hemolysis. We aimed at a comprehensive analysis of the CD59 gene from publicly available databases to identify variants and evaluate their pathophysiologic potential.

methodsVariants in the CD59 coding sequence of exons 4, 5, and 6 and their splice sites were systematically compiled from 4 major populations across 6 whole-genome and whole-exome databases. The PredictSNP algorithm assessed the functional impact of non-synonymous variants.

resultsAmong 488,592 individuals, 160 distinct alleles were identified in 6881 subjects (0.7%). Among 93 alleles with non-synonymous variants, 43 were classified as deleterious and 49 (2 variants encoded the same amino acid change) as neutral by PredictSNP. Additional variants included: 53 synonymous, 9 deletions/duplications, 3 splice site, and 2 nonsense. Among the 14 non-synonymous variants reported in patient samples, 9 were classified as deleterious (64.3%) and 5 as neutral (35.7%). DISCUSSION: We collated a list of CD59 variants, which were classified as neutral or deleterious by PredictSNP, from genome databases. These results can be applied to identify individuals with possible latent CD59 deficiency symptoms, such as hemolytic transfusion reactions. In conjunction with clinical data, these CD59 variants can guide personalized clinical decisions.

Indexed as

CD59 AntigensDatabases, GeneticGenetic VariationAllelesExonsHumansCD59 AntigensCD59 protein, humancomputational modelhemolysisimmunohematologypopulation geneticsreal‐world data

Identifiers

PMID40739794
PMCPMC12432816

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.