Evidence map›Paper›PMID 40751491›Full record

ArticleG3 (Bethesda, Md.)2025

Congenital heart disease missense mutations in the TBX5 DNA-binding domain alter thermal stability and DNA-binding affinity.

Alejandro Rivera-Madera, Edwin G Peña-Martínez, Jean L Messon-Bird, Diego A Pomales-Matos, Oswaldo L Echevarría-Bonilla, Leandro Sanabria-Alberto, Esther A Peterson-Peguero, José A Rodríguez-Martínez

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Alejandro Rivera-MaderaDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0000-0003-0037-4822
Edwin G Peña-MartínezDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0000-0002-9076-528X
Jean L Messon-BirdDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0009-0000-3276-1902
Diego A Pomales-MatosDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0000-0002-4129-7678
Oswaldo L Echevarría-BonillaDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0009-0001-3105-3960
Leandro Sanabria-AlbertoDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0009-0004-8203-4139
Esther A Peterson-PegueroDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0000-0001-7497-0980
José A Rodríguez-MartínezDepartment of Biology, University of Puerto Rico, Río Piedras Campus, San Juan, PR 00931, United States.ORCID 0000-0002-1191-2887

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Jose R. Rodriguez-Medina · 2012 to 2026
$52.9M
Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
Increasing Diversity in Genomics for the Next generation (IDGeNe)R25HG012702 · NHGRI · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI JOSE E GARCIA-ARRARAS · 2022 to 2026
$1.7M
Uncovering the DNA recognition rules of cardiac transcription factorsSC1GM127231 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI RODRIGUEZ-MARTINEZ, JOSE A · 2018 to 2021
$1.4M
NHGRI NIH HHS R25 HG012702NIGMS NIH HHS P20 GM103475NIGMS NIH HHS R25 GM061151NIGMS NIH HHS SC1 GM127231NIH HHS SC1GM127231NIH ID-GENE Fellowship 1R25HG012702-01NIH Institutional Development Award P20GM103475NIH RISE Fellowship 5R25GM061151-20NSF 1736026NSF IQ BIOREU 1852259NSF BioXFEL Fellowship STC-1231306NSF PR-LSAMP 2306079NSF PR-LSAMP HRD-2008186NSF REU: PR-CLIMB Program 2050493Puerto Rico Science, Technology, and Research TrustUniversity of Puerto Rico Rio Piedras Institutional Funds
6 · The paper itself

Abstract

Missense mutations can alter the biochemical properties of proteins, including stability, structure, and function, potentially contributing to the development of multiple human diseases. Mutations in TBX5, a transcription factor necessary for heart development, are among the causes of congenital heart diseases. However, further research on biophysical and biochemical mechanisms is needed to understand how missense mutations in transcription factors alter their function in regulating gene expression. In this work, we applied in vitro and in silico approaches to understand how 5 missense mutations in the TBX5 T-box DNA-binding domain (I54T, M74V, I101F, R113K, and R237W) impact protein structure, thermal stability, and DNA-binding affinity to known TBX5 cognate binding sites. Differential scanning fluorimetry showed that mutants I54T and M74V had decreased thermal stability, mutants I101F and R113K had increased stability, and R237W had no significant effect on stability. Additionally, DNA-binding affinity decreased for all 5 missense mutants when evaluated in vitro for known TBX5 genomic binding sites within regulatory elements of Nppa and Camta1 genes. Structural modeling of the TBX5 predicted altered protein conformations and stability due to the loss or gain of amino acid residue interactions. Together, our findings provide biophysical and biochemical mechanisms that can be further explored to establish causality between TBX5 missense mutations and the development of congenital heart diseases.

Indexed as

DNAHeart Defects, CongenitalMutation, MissenseT-Box Domain ProteinsBinding SitesHumansModels, MolecularProtein BindingProtein ConformationProtein DomainsProtein StabilityThermodynamicsDNAT-Box Domain ProteinsT-box transcription factor 5DNA-binding affinitymissense mutationsTBX5thermal stabilitytranscription factor

Identifiers

PMID40751491
PMCPMC12588321

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.