Evidence map›Paper›PMID 40753087›Full record

ArticleNature communications2025

Decompartmentalization of the yeast mitochondrial metabolism to improve chemical production in Issatchenkia orientalis.

Vinh G Tran, Shih-I Tan, Hao Xu, Daniel R Weilandt, Xi Li, Sarang S Bhagwat, Zhixin Zhu, Jeremy S Guest, Joshua D Rabinowitz, Huimin Zhao

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Review
  3. Review
  4. Leveraging 13C-Labeling to Assign Molecular Formulas to Unknown Yeast Metabolites.Journal of the American Society for Mass Spectrometry · 2026
    Article
  5. Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Vinh G TranDepartment of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Shih-I TanDepartment of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Hao XuDepartment of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0009-0002-4800-1478
Daniel R WeilandtDepartment of Chemistry and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-0556-8485
Xi LiDepartment of Chemistry and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.
Sarang S BhagwatCarl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0000-0002-2620-2829
Zhixin ZhuDepartment of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, USA.
Jeremy S GuestCarl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL, USA.ORCID http://orcid.org/0000-0003-2489-2579
Joshua D RabinowitzDepartment of Chemistry and Lewis Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA.ORCID http://orcid.org/0000-0002-1247-4727
Huimin ZhaoDepartment of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL, USA. zhao5@illinois.edu.ORCID http://orcid.org/0000-0002-9069-6739

Funding

U.S. Department of Energy (DOE) DE-SC0018420
6 · The paper itself

Abstract

Microbial production of chemicals may suffer from inadequate cofactor provision, a challenge further exacerbated in yeasts due to compartmentalized cofactor metabolism. Here, we perform cofactor engineering through the decompartmentalization of mitochondrial metabolism to improve succinic acid (SA) production in Issatchenkia orientalis. We localize the reducing equivalents of mitochondrial NADH to the cytosol through cytosolic expression of its pyruvate dehydrogenase (PDH) complex and couple a reductive tricarboxylic acid pathway with a glyoxylate shunt, partially bypassing an NADH-dependent malate dehydrogenase to conserve NADH. Cytosolic SA production reaches a titer of 104 g/L and a yield of 0.85 g/g glucose, surpassing the yield of 0.66 g/g glucose constrained by cytosolic NADH availability. Additionally, expressing cytosolic PDH, we expand our I. orientalis platform to enhance acetyl-CoA-derived citramalic acid and triacetic acid lactone production by 1.22- and 4.35-fold, respectively. Our work establishes I. orientalis as a versatile platform to produce markedly reduced and acetyl-CoA-derived chemicals.

Indexed as

MitochondriaSaccharomycetalesAcetyl Coenzyme ACitric Acid CycleCytosolGlucoseMetabolic EngineeringNADPyruvate Dehydrogenase ComplexSuccinic AcidAcetyl Coenzyme AGlucoseNADPyruvate Dehydrogenase ComplexSuccinic Acid

Identifiers

PMID40753087
PMCPMC12318132

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.