Evidence mapPaperPMID 40753276Full record

ArticleCommunications biology2025

A multi-tissue human knee single-cell atlas identifies that osteoarthritis reduces regenerative tissue stem cells while increasing inflammatory pain macrophages.

Rajnikant Dilip Raut, Amit Kumar Chakraborty, Tuhina Neogi, Michael Albro, Brian Snyder, Thomas P Schaer, Chao Zhang, Mark W Grinstaff, Manish V Bais

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. WTAP-Mediated mAdvanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  18. LOXL2 alleviates post-traumatic knee osteoarthritis and pain.Journal of orthopaedic translation · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Rajnikant Dilip RautTranslational Dental Medicine, Boston University Henry M. Goldman School of Dental Medicine, Boston, MA, USA.
Amit Kumar ChakrabortyTranslational Dental Medicine, Boston University Henry M. Goldman School of Dental Medicine, Boston, MA, USA.ORCID http://orcid.org/0000-0001-7455-6579
Tuhina NeogiSection of Rheumatology, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.
Michael AlbroDepartment of Mechanical Engineering, Boston University, Boston, Massachusetts, MA, USA.
Brian SnyderMusculoskeletal Translational Innovation Initiative, Carl J. Shapiro Department of Orthopaedic Surgery, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, USA.
Thomas P SchaerDepartment of Clinical Studies New Bolton Center, University of Pennsylvania School of Veterinary Medicine, Kennett Square, PA, USA.ORCID http://orcid.org/0000-0002-4340-8212
Chao ZhangSection of Computational Biomedicine, Boston University Chobanian & Avedisian School of Medicine, Boston, MA, USA.ORCID http://orcid.org/0000-0001-8019-7998
Mark W GrinstaffDepartments of Biomedical Engineering and Chemistry, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5453-3668
Manish V BaisTranslational Dental Medicine, Boston University Henry M. Goldman School of Dental Medicine, Boston, MA, USA. bmanish@bu.edu.ORCID http://orcid.org/0000-0003-4198-7377

Funding

Mechanism of LSD1 Function and Its Therapeutic Application for Progressive Oral MalignancyR01DE031413 · NIDCR · BOSTON UNIVERSITY MEDICAL CAMPUS · 2024 to 2025
$985k
NIDCR NIH HHS R01 DE031413
6 · The paper itself

Abstract

Osteoarthritis (OA) affects the entire knee joint, yet cross-tissue molecular interplay remains poorly understood. To address this, we constructed the first single-cell RNA sequencing atlas of knee OA, profiling articular cartilage, meniscus, synovium, and subchondral bone. Our analysis revealed that healthy synovium and meniscus harbor abundant tissue stem cells (TSCs) and immune cells, which are significantly altered in OA. Regenerative TSCs expressing SDF1, SOX9, CD146, PDGFRB, and CD105 are reduced, while osteogenic TSCs marked by NT5E are expanded. OA cartilage has distinct MMP13-producing detrimental chondrocytes while increasing RUNX2-producing chondrocytes and fibroblasts. OA tissues are enriched with inflammatory (IL1B-IL6-NOS2-TNF) and pain-marker (P2RX7)-specific macrophages, inflammatory genes expression and immune cells. Cell-cell communication contributes to OA progression, promotes proinflammatory macrophages, and osteogenic TSCs. By identifying these OA-specific cells and molecular interplay, and constructing the first multi-tissue comprehensive atlas, we bridge the critical knowledge gaps and lay the foundation for advancing targeted OA therapies.

Indexed as

Knee JointMacrophagesOsteoarthritis, KneeStem CellsCartilage, ArticularFemaleHumansInflammationMaleMiddle AgedRegenerationSingle-Cell AnalysisSynovial Membrane

Identifiers

PMID40753276
PMCPMC12317986

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.