Evidence map›Paper›PMID 40763987›Full record

ArticleLife science alliance2025

Epigenetic liquid biopsies reveal endothelial turnover and erythropoiesis in asymptomatic COVID-19.

Roni Ben-Ami, Netanel Loyfer, Eden Cohen, Gavriel Fialkoff, Israa Sharkia, Sheina Piyanzin, Naama Bogot, Danit Kochan, George Kalak, Amir Jarjoui and 18 more

Abstract read
In one paragraph

Article in Life science alliance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

28 authors.

Roni Ben-AmiDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-4939-0324
Netanel LoyferSchool of Computer Science, Hebrew University of Jerusalem, Jerusalem, Israel.
Eden CohenDepartment of Military Medicine and "Tzameret", Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Gavriel FialkoffSchool of Computer Science, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-8469-1010
Israa SharkiaSchool of Computer Science, Hebrew University of Jerusalem, Jerusalem, Israel.
Sheina PiyanzinDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Naama BogotDepartment of Radiology, Hebrew University of Jerusalem, Jerusalem, Israel.
Danit KochanPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
George KalakPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
Amir JarjouiPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-8304-0117
Chen Chen-ShualiPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
Hava AzulaiPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
Hezi BarhoumPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
Nissim ArishPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel.
Moshe M GreenbergerDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0009-0006-4918-9053
David VellemanDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Ramzi KurdDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-1484-0460
Eli Ben-ChetritDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-5743-1387
Davina BohmDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Talya WolakDepartment of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Ahmad QuteinehThe Institute of Pediatric Gastroenterology and Nutrition, Shaare Zedek Medical Center, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Gordon CannGRAIL LLC, Menlo Park, CA, USA.
Benjamin GlaserEndocrinology and Metabolism, Hadassah Medical Center and Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Nir FriedmanSchool of Computer Science, Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-9678-3550
Tommy KaplanDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Ruth ShemerDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel.
Ariel RokachPulmonary Institute, Hebrew University of Jerusalem, Jerusalem, Israel rokach.ariel@gmail.com.
Yuval DorDepartment of Developmental Biology and Cancer Research, Institute for Medical Research Israel-Canada, Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel yuvald@ekmd.huji.ac.il.ORCID 0000-0003-2456-2289

Funding

Non-Invasive Diagnosis of Human Beta Cell Damage and DeathUC4DK104216 · NIDDK · UNIVERSITY OF FLORIDA · PI SCHATZ, DESMOND ARTHUR · 2014 to 2014
$1.4M
Non-invasive detection of cell death in type 1 diabetes: insight into novel disease mechanisms.UC4DK116274 · NIDDK · UNIVERSITY OF FLORIDA · PI SCHATZ, DESMOND ARTHUR · 2017 to 2017
$1.4M
NIDDK NIH HHS UC4 DK104216NIDDK NIH HHS UC4 DK116274
6 · The paper itself

Abstract

Understanding the full spectrum of tissues affected by SARS-CoV-2 is crucial for deciphering the heterogeneous clinical course of COVID-19. We analyzed DNA methylation and histone modifications in circulating chromatin to assess cell type-specific turnover in patients ranging from asymptomatic to severe cases, in relation to clinical outcomes. Severe COVID-19 was marked by a massive elevation of circulating cell-free DNA (cfDNA) from lung epithelium, cardiomyocytes, vascular endothelium, and erythroblasts, indicating increased cell death or turnover. The immune response was reflected by elevated B-cell and monocyte/macrophage cfDNA and an interferon response before cfDNA release. Strikingly, monocyte/macrophage cfDNA (but not monocyte counts), as well as lung epithelial and endothelial cfDNA, predicted clinical deterioration and duration of hospitalization. Asymptomatic patients had elevated immune cfDNA but no evidence of pulmonary or cardiac damage. Surprisingly, these patients showed elevated endothelial and erythroblast cfDNA, suggesting subclinical vascular and erythrocyte turnover are universal features of COVID-19, independent of disease severity. Epigenetic liquid biopsies provide a noninvasive means of monitoring COVID-19 patients and reveal subclinical vascular damage and red blood cell turnover.

Indexed as

COVID-19Endothelium, VascularEpigenesis, GeneticErythropoiesisAdultAgedCell-Free Nucleic AcidsDNA MethylationFemaleHumansLiquid BiopsyLungMaleMiddle AgedSARS-CoV-2Cell-Free Nucleic Acids

Identifiers

PMID40763987
PMCPMC12326330

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.