Evidence map›Paper›PMID 40764304›Full record

ArticleNature communications2025

DDX41 resolves G-quadruplexes to maintain erythroid genome integrity and prevent cGAS-mediated cell death.

Honghao Bi, Kehan Ren, Pan Wang, Ermin Li, Xu Han, Wen Wang, Jing Yang, Inci Aydemir, Kara Tao, Renee Ma and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. G-Quadruplexes: Structural Diversity and Emerging Roles in Biomolecular Condensation.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  2. [Germline DDX41 mutations and myelodysplastic neoplasms].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2026
    Review
  3. Article
  4. Stromal Gasdermin D-mediated Pyroptosis Drives Maladaptive CD4bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Honghao BiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Kehan RenDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4409-7145
Pan WangDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Ermin LiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Xu HanDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Wen WangGalter Health Sciences Library and Learning Center, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Jing YangDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Inci AydemirDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Kara TaoDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Renee MaDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Lucy A GodleyRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1914-9158
Yan LiuRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-4878-9111
Vipul ShuklaRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-1422-5182
Elizabeth T BartomRobert H. Lurie Comprehensive Cancer Center, Northwestern University, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-5618-2582
Yuefeng TangNorthwell Institute of Molecular Medicine, Feinstein Institutes for Medical Research, Manhasset, NY, USA.
Lionel BlancNorthwell Institute of Molecular Medicine, Feinstein Institutes for Medical Research, Manhasset, NY, USA.ORCID http://orcid.org/0000-0002-0185-6260
Madina SukhanovaDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Peng JiDepartment of Pathology, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA. peng-ji@fsm.northwestern.edu.ORCID http://orcid.org/0000-0002-8849-3625

Funding

Cellular and Molecular Control of Normal and Disordered ErythropoiesisR35HL171168 · NHLBI · FEINSTEIN INSTITUTE FOR MEDICAL RESEARCH · PI Lionel Blanc · 2024 to 2026
$2.6M
Targeting gasdermin D to treat myelodysplastic syndromesR01HL169507 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Peng Ji · 2023 to 2026
$2.1M
The roles of mDia2 in hematopoietic stem and progenitor cell engraftment and migrationR01HL148012 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2023
$2.1M
The roles of mDia2 in membrane remodeling and organelle clearance during reticulocyte formationR01DK124220 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2024
$2.0M
The role of Pleckstrin-2 as a functional node in myeloid proliferationR01HL150729 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI JI, PENG · 2020 to 2023
$2.0M
Functional roles of DDX41 in the homeostasis of G quadruplexes in erythropoiesisR01DK138205 · NIDDK · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Peng Ji · 2024 to 2026
$1.4M
Tumor suppressive functions of TET proteins in B cell malignancies: role of G-quadruplex structuresR00CA248835 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI SHUKLA, VIPUL · 2022 to 2024
$726k
The functional role of DDX41 in myelodysplastic syndromesF32HL170648 · NHLBI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BI, HONGHAO · 2023 to 2025
$249k
The role of Gasdermin D in the bone marrow microenvironment during clonal hematopoiesis progressionK99CA289959 · NCI · NORTHWESTERN UNIVERSITY · PI REN, KEHAN · 2025 to 2025
$123k
NCI NIH HHS K99 CA289959NCI NIH HHS R00 CA248835NHLBI NIH HHS F32 HL170648NHLBI NIH HHS R01 HL148012NHLBI NIH HHS R01 HL150729NHLBI NIH HHS R01 HL169507NHLBI NIH HHS R35 HL171168NIDDK NIH HHS R01 DK124220NIDDK NIH HHS R01 DK138205U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) K99CA289959U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R00-CA248835U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) F32-HL170648U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL150729U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R01-HL169507U.S. Department of Health & Human Services | NIH | National Heart, Lung, and Blood Institute (NHLBI) R35-HL171168U.S. Department of Health & Human Services | NIH | National Institute of Diabetes and Digestive and Kidney Diseases (National Institute of Diabetes & Digestive & Kidney Diseases) R01-DK124220
6 · The paper itself

Abstract

Deleterious germline DDX41 variants constitute the most common inherited predisposition disorder linked to myeloid neoplasms (MNs), yet their role in MNs remains unclear. Here we show that DDX41 is essential for erythropoiesis but dispensable for other hematopoietic lineages. Ddx41 knockout in early erythropoiesis is embryonically lethal, while knockout in late-stage terminal erythropoiesis allows mice to survive with normal blood counts. DDX41 deficiency induces a significant upregulation of G-quadruplexes (G4), which co-distribute with DDX41 on the erythroid genome. DDX41 directly binds to and resolves G4, which is significantly compromised in MN-associated DDX41 mutants. G4 accumulation induces erythroid genome instability, ribosomal defects, and p53 upregulation. However, p53 deficiency does not rescue the embryonic death of Ddx41 hematopoietic-specific knockout mice. In parallel, genome instability also activates the cGas-Sting pathway, impairing survival, as cGas deficiency rescues the lethality of hematopoietic-specific Ddx41 knockout mice. This is supported by data from a DDX41-mutated MN patient and human iPSC-derived bone marrow organoids. Our study establishes DDX41 as a G4 resolvase, essential for erythroid genome stability and suppressing the cGAS-STING pathway.

Indexed as

DEAD-box RNA HelicasesErythroid CellsG-QuadruplexesNucleotidyltransferasesAnimalsCell DeathCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseErythropoiesisGenomic InstabilityHumansMiceMice, KnockoutTumor Suppressor Protein p53cGAS protein, humancGAS protein, mouseCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDDX41 protein, humanDEAD-box RNA HelicasesNucleotidyltransferasesTumor Suppressor Protein p53

Identifiers

PMID40764304
PMCPMC12325982

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.