Evidence map›Paper›PMID 40778120›Full record

ArticlemedRxiv : the preprint server for health sciences2025

Protein risk scores enable precise prediction of cardiovascular events in chronic kidney disease patients.

Yang-Gyun Kim, Yonghyun Nam, Thomas M Westbrook, Jaehyun Joo, Jakob Woerner, Rajat Deo, Marylyn D Ritchie, Dokyoon Kim

Abstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yang-Gyun KimDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Yonghyun NamDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Thomas M WestbrookDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jaehyun JooDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Jakob WoernerDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Rajat DeoDivision of Cardiovascular Medicine, Electrophysiology Section, Hospital of the University of Pennsylvania, Philadelphia, Pennsylvania, 19104, USA.
Marylyn D RitchieDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Dokyoon KimDivision of Informatics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.

Funding

Methods for Enhancing Polygenic Risk Prediction Models for Complex DiseaseR01HL169458 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI Dokyoon Kim, MARYLYN D RITCHIE · 2023 to 2026
$3.1M
Unravelling genetic basis of comorbidity using EHR-linked biobank dataR01GM138597 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KIM, DOKYOON · 2020 to 2023
$2.2M
NHLBI NIH HHS R01 HL169458NIGMS NIH HHS R01 GM138597
6 · The paper itself

Abstract

Background: Cardiovascular disease (CVD) is the leading cause of death in patients with chronic kidney disease (CKD). However, there is still a lack of reliable biomarkers to predict cardiovascular events (CVEs) in this population. Methods: This study aimed to develop a protein risk score (ProRS) model to predict CVEs in CKD patients. From the UK Biobank Pharma Proteomics Project (UKB-PPP), a total of 1,799 patients with CKD and no prior history of CVD were enrolled. Participants were randomly divided into a training set (70%) and an evaluation set (30%). We analyzed 2,920 plasma proteins to identify associations with CVEs, including coronary heart disease, heart failure, and ischemic stroke. Results: After adjusting for significant clinical factors, 38 proteins remained consistently significant in both the training and evaluation sets. Using an elastic net model, we selected 34 to construct the ProRS. The area under the receiver operating characteristics curve for annual CVEs prediction using the ProRS ranged from 0.67 to 0.74, compared to 0.60 to 0.69 for a clinical risk model, and 0.58 to 0.63 for a polygenic risk score. The 10-year incidence of CVEs among individuals in the top 5% of the ProRS distribution was 44.4%, significantly higher than 29.6% observed in the top 5% of the clinical risk model. Conversely, the bottom 5% of the ProRS group showed a 0% incidence rate, compared to 3.7% in the bottom 5% of the clinical risk model, demonstrating superior performance in both risk identification and exclusion. Notably, among patients classified as low risk by the clinical risk model, those with a high ProRS showed an increased risk of CVEs. In contrast, when the ProRS was low, the influence of the clinical risk model on event prediction was minimal. Mendelian randomization analysis identified 25 proteins whose levels were causally influenced by CKD, 10 of which were also associated with CVD. Conclusions: We demonstrated that plasma proteomics holds promise as a predictive biomarker for CVEs in patients with CKD. By enabling early identification of high-risk individuals, this approach may facilitate timely preventive interventions and ultimately reduce cardiovascular mortality in this vulnerable population.

Indexed as

Biomarker DiscoveryCardiovascular EventsChronic Kidney DiseasePlasma ProteomicsProtein Risk ScoreRisk Stratification

Identifiers

PMID40778120
PMCPMC12330408

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.