Evidence map›Paper›PMID 40778765›Full record

ArticlemSystems2025

Phenotypic and omics analyses of the Sordariomycetes

Z Agirrezabala, A Otamendi, R Liébana, M Azkargorta, C Perez-Cruz, M T Dueñas, M Ostra, R López, I V Grigoriev, L Alonso-Sáez and 4 more

Abstract read
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In one paragraph

Article in mSystems, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Z AgirrezabalaDepartment of Applied Chemistry, Laboratory of Microbiology, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastian, Spain.
A OtamendiDepartment of Applied Chemistry, Laboratory of Microbiology, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastian, Spain.ORCID 0000-0002-1475-321X
R LiébanaAZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Sukarrieta, Spain.ORCID 0000-0002-2196-5632
M AzkargortaProteomics Platform, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), CIBERehd, Derio, Spain.
C Perez-CruzAZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Sukarrieta, Spain.
M T DueñasDepartment of Applied Chemistry, Laboratory of Microbiology, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastian, Spain.
M OstraDepartment of Applied Chemistry, Laboratory of Analytical Chemistry, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastián, Spain.
R LópezDepartment of Organic Chemistry I, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastián, Spain.
I V GrigorievU.S. Department of Energy Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, Berkeley, California, USA.
L Alonso-SáezAZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Sukarrieta, Spain.ORCID 0000-0003-1757-4767
F ElortzaProteomics Platform, Center for Cooperative Research in Biosciences (CIC bioGUNE), Basque Research and Technology Alliance (BRTA), CIBERehd, Derio, Spain.
A LanzénAZTI, Marine Research, Basque Research and Technology Alliance (BRTA), Pasaia, Spain.
S HaridasU.S. Department of Energy Joint Genome Institute (JGI), Lawrence Berkeley National Laboratory, Berkeley, California, USA.
Oier EtxebesteDepartment of Applied Chemistry, Laboratory of Microbiology, Faculty of Chemistry, University of the Basque Country UPV/EHU, San Sebastian, Spain.ORCID 0000-0002-9786-6091

Funding

Agencia Estatal de Investigación PID2023-147050NB-I00Diputación Foral de Gipuzkoa DG23/07Diputación Foral de Gipuzkoa DG24/05Eusko Jaurlaritza IT1662-22Eusko Jaurlaritza IT1741-22Eusko Jaurlaritza KK-2021/00034Eusko Jaurlaritza KK-2022/00107U.S. Department of Energy DE-AC02-05CH11231
6 · The paper itself

Abstract

Marine environments harbor a vast diversity of microorganisms, which have developed multiple strategies to adapt to challenging conditions and represent a valuable source for new products such as pigments, enzymes, and bioactive compounds. From all microorganisms inhabiting marine environments, fungi have been the least studied, despite their ubiquitous presence and great biotechnological potential. Here, we focused on the isolation and characterization of filamentous fungi from marine sediment samples, which were collected along the Basque coast in Spain. Through phenotypic characterization, we identified isolates potentially able to produce secondary metabolites or grow on minimal culture medium supplemented with recalcitrant algal polysaccharides. Based on this screening, two Sordariomycetes strains were selected for further analyses through genome sequencing and omics techniques: (i) a

Indexed as

AscomycotaEstuariesFresh WaterGenome, FungalGenomicsGeologic SedimentsMultigene FamilyPhenotypePigments, BiologicalPolysaccharidesSeawaterSpainTranscription, GeneticfucoidanPigments, BiologicalPolysaccharidesCAZymesestuarine filamentous fungifucoidanHypocrealessecondary metabolite gene clusterssecondary metabolitesSordariomycetes

Identifiers

PMID40778765
PMCPMC12455924

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.