Evidence map›Paper›PMID 40785119›Full record

ArticleACS synthetic biology2025

YTK Display-and-Secrete: Screening for Optimal Protein Secretion Elements in

Anastasiya Kishkevich, Klaudia Ciurkot, Tom Ellis

Abstract read
In one paragraph

Article in ACS synthetic biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Anastasiya KishkevichImperial Centre for Engineering Biology, Imperial College London, London SW7 2AZ, U.K.
Klaudia CiurkotImperial Centre for Engineering Biology, Imperial College London, London SW7 2AZ, U.K.
Tom EllisImperial Centre for Engineering Biology, Imperial College London, London SW7 2AZ, U.K.ORCID 0000-0001-5392-976X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Engineering yeast to secrete target proteins requires searching for optimal combinations of promoters and signal peptides so that genes can be composed that give a high expression and efficient secretion. Most methods for this involve laborious, one-by-one assessments or require the use of enzymatic reporter proteins in order to achieve high-throughput capacity. Here, we introduce a novel modular method for the high throughput screening of yeast strains designed to secrete proteins of interest. Our approach integrates combinatorial DNA assembly, yeast surface display, flow cytometry, and nanopore DNA sequencing to facilitate rapid screening. Building on a widely used yeast toolkit (YTK) for modular cloning, our system creates surface display libraries with N- and C-terminal epitope tags by fast DNA assembly and genome-integration into

Indexed as

Saccharomyces cerevisiaeSaccharomyces cerevisiae Proteinsbeta-LactamasesFlow CytometryPromoter Regions, Geneticbeta-LactamasesSaccharomyces cerevisiae Proteinsnanopore sequencingprotein secretionyeast surface displayyeast toolkit

Identifiers

PMID40785119
PMCPMC12455636

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.