Evidence map›Paper›PMID 40790046›Full record

ArticleScientific data2025

An annotated chromosome-level genome of a troglophilic spider (Pimoa clavata).

Yiming Zhang, Xiaoqing Zhang, Tongyao Jiang, Yejie Lin, Shuqiang Li

Abstract readDataset
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Yiming ZhangCollege of Life Sciences, Anhui Normal University, Wuhu, 241000, China.ORCID 0000-0001-8547-6654
Xiaoqing ZhangKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Chinese Academy of Sciences, Beijing, 100101, China.
Tongyao JiangKey Laboratory of Animal Biodiversity Conservation and Integrated Pest Management, Chinese Academy of Sciences, Beijing, 100101, China.ORCID 0000-0002-6148-1157
Yejie LinCollege of Life Sciences, Anhui Normal University, Wuhu, 241000, China.ORCID 0000-0002-6789-2731
Shuqiang LiCollege of Life Sciences, Anhui Normal University, Wuhu, 241000, China. lisq@ioz.ac.cn.ORCID 0000-0002-3290-5416

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Climatic upheavals throughout Earth's history have driven species to subterranean refugia, where stable microclimates buffer environmental extremes. The spider family Pimoidae, relict lineages sensitive to thermal fluctuations, exemplifies this climate-driven habitat transition. Here, we present the first chromosome-level genome of Pimoa clavata, a troglophilic spider endemic to Beijing's mountainous caves. Combining PacBio HiFi and Hi-C sequencing, we assembled a 1.94 Gb genome with 29 scaffolds in chromosomes level, which were further subjected to comprehensive annotation. The well-annotated genome of this species provides foundational insights into the genomic basis of subterranean adaptation, offering critical resources for evolutionary genomics and conservation of climate-vulnerable cave species.

Indexed as

ChromosomesGenomeSpidersAnimalsCaves

Identifiers

PMID40790046
PMCPMC12339956

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.