Evidence mapPaperPMID 40797277Full record

ArticleHereditas2025

Genetic overlap between sarcoidosis and lung cancer: a combined in silico and in vitro approach.

Sanjukta Dasgupta, Moupiya Ghosh, Subhendu Chakrabarty, Gopal Chakrabarti, Amlan Das

Abstract read
In one paragraph

Article in Hereditas, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

Sanjukta DasguptaDepartment of Biotechnology, Center for Multidisciplinary Research & Innovations, Brainware University, 398, Ramkrishnapur Rd, near Jagadighata Market, Barasat, Kolkat, West Bengal , 700125, India. sd.bt@brainwareuniversity.ac.in.ORCID http://orcid.org/0000-0002-9085-2658
Moupiya GhoshDepartment of Basic Science and Humanities, Institute of Engineering and Management (IEM), Kolkata, University of Engineering and Management, Newtown, Kolkata, West Bengal , 700160, India.
Subhendu ChakrabartyDepartment of Biotechnology and Dr. B.C. Guha Centre for Genetic Engineering and Biotechnology, University of Calcutta, Kolkata, West Bengal, 700019, India.
Gopal ChakrabartiDepartment of Biotechnology and Dr. B.C. Guha Centre for Genetic Engineering and Biotechnology, University of Calcutta, Kolkata, West Bengal, 700019, India.
Amlan DasDepartment of Microbiology, Royal School of Biosciences, The Assam Royal Global University, Assam, 781035, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sarcoidosis patients exhibit an elevated risk of developing lung cancer (LC), suggesting shared genetic and molecular mechanisms between these conditions. This study aimed to identify common differentially expressed genes (DEGs) in sarcoidosis and LC and to evaluate the therapeutic potential of a repurposable drug targeting these shared genes. Gene expression datasets (GSE157671 and GSE229253) were analyzed to identify overlapping DEGs, with validation performed using additional GEO datasets and the GEPIA tool. Functional enrichment and protein-protein interaction (PPI) analyses were conducted using Enrichr and STRING, while associated miRNAs and transcription factors were identified via miRNet. Twelve DEGs-SALL4, WNT10A, RASAL1, CAMK2B, GADD45B, KLF4, OLR1, CSF3, WIF1, RAMP3, AGER, and PRKAG3-were consistently dysregulated in both diseases. These genes were significantly associated with epithelial cell enrichment and the Wnt signaling pathway. Drug-gene interaction analysis using DGIdb prioritized metformin as a candidate drug targeting PRKAG3. Its structural integrity was confirmed via X-ray diffraction (XRD) and Rietveld refinement. In vitro validation using MTT assays revealed that metformin selectively reduced viability in A549 (adenocarcinoma human alveolar basal epithelial cells) and HeLa (a widely used epithelial cancer cell line), with minimal cytotoxicity in WI38 normal lung fibroblasts. Colony formation assays further demonstrated dose-dependent, long-term growth inhibition in cancer cells, corroborated by observable morphological alterations. Overall, this study highlights shared pathogenic signatures between sarcoidosis and LC and proposes metformin as a promising therapeutic candidate. These findings support the rationale for drug repurposing and the development of targeted therapies for patients with overlapping disease profiles or those at increased risk of LC progression from sarcoidosis.

Indexed as

Lung NeoplasmsSarcoidosisA549 CellsComputational BiologyComputer SimulationGene Expression ProfilingGene Regulatory NetworksHeLa CellsHumansKruppel-Like Factor 4MetforminMicroRNAsProtein Interaction MapsKLF4 protein, humanKruppel-Like Factor 4MetforminMicroRNAsDifferentially expressed genesLung cancerMetforminSarcoidosisX-ray diffraction

Identifiers

PMID40797277
PMCPMC12341126

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.