Evidence map›Paper›PMID 40813888›Full record

ArticleCommunications biology2025

PAX6-dependent differentiation landscape of ocular surface epithelium via single-cell RNA sequencing in hiPSC-derived ocular developmental organoid.

Rei Kamuro, Masahito Yoshihara, Susumu Hara, Takahiro Nemoto, Laura Howard, Ai Honda, Ayano Yamamoto, Toru Takigawa, Susumu Sakimoto, Koichi Baba and 2 more

Abstract read
In one paragraph

Article in Communications biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rei Kamuro *Department of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.ORCID http://orcid.org/0000-0002-0628-904X
Masahito Yoshihara *Premium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-8915-9282
Susumu HaraDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Takahiro NemotoPremium Research Institute for Human Metaverse Medicine (WPI-PRIMe), The University of Osaka, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0003-2981-4035
Laura HowardSchool of Optometry and Vision Sciences, Cardiff University, Cardiff, Wales, UK.ORCID http://orcid.org/0000-0002-5751-6185
Ai HondaDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Ayano YamamotoDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Toru TakigawaDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Susumu SakimotoDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Koichi BabaDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan.
Andrew J QuantockSchool of Optometry and Vision Sciences, Cardiff University, Cardiff, Wales, UK.
Kohji NishidaDepartment of Ophthalmology, The University of Osaka Graduate School of Medicine, Osaka, Japan. knishida@ophthal.med.osaka-u.ac.jp.ORCID http://orcid.org/0000-0001-9069-3610

Funding

Japan Agency for Medical Research and Development (AMED) JP18gm1210004, JP22ek0109584, 22bm0804021h0003, and 24bm1123043h0002
6 · The paper itself

Abstract

During eye development, surface ectoderm cells that express PAX6 differentiate into corneal, limbal and conjunctival epithelia. However, several aspects of this differentiation process -- such as the developmental origin of the limbal epithelium and the mechanisms that underlie PAX6-mediated lineage specification -- are not properly understood. To explore these issues, we used single-cell RNA sequencing to study ocular surface epithelial cells derived from human induced pluripotent stem cells. Our analysis reveals that the corneal and conjunctival epithelial cell lineages originate from the surface ectoderm, and that the conjunctival lineage contributes to limbal epithelial cell populations. We also show that primordial conjunctival epithelial cells express limbal epithelial markers before lineage bifurcation. Finally, the activity and expression of PAX6 are highest in corneal epithelial cells, followed by those of the limbal epithelium and conjunctival epithelium, suggesting that lineage-specific differentiation is regulated by levels of PAX6 activity. These findings provide deeper understanding of the early-stage human ocular surface development.

Indexed as

Cell DifferentiationEpithelium, CornealInduced Pluripotent Stem CellsOrganoidsPAX6 Transcription FactorCell LineageConjunctivaEpithelial CellsGene Expression Regulation, DevelopmentalHumansSequence Analysis, RNASingle-Cell AnalysisPAX6 protein, humanPAX6 Transcription Factor

Identifiers

PMID40813888
PMCPMC12354803

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.