Evidence map›Paper›PMID 40832205›Full record

ArticlebioRxiv : the preprint server for biology2025

Long read metagenomics-based precise tracking of bacterial strains and genomic changes after fecal microbiota transplantation.

Yu Fan, Mi Ni, Varun Aggarwala, Edward A Mead, Magdalena Ksiezarek, Lei Cao, Michael A Kamm, Thomas J Borody, Sudarshan Paramsothy, Nadeem O Kaakoush and 3 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yu FanDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-5978-5004
Mi NiDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Varun AggarwalaDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Edward A MeadDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Magdalena KsiezarekDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Lei CaoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Michael A KammDepartment of Gastroenterology and Medicine, St. Vincent's Hospital, Melbourne, VIC, Australia.
Thomas J BorodyCentre for Digestive Diseases, Sydney, NSW, Australia.
Sudarshan ParamsothyUniversity of Sydney, Sydney, Australia.
Nadeem O KaakoushSchool of Biomedical Sciences, University of New South Wales, Sydney, Australia.
Ari GrinspanDivision of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Jeremiah J FaithDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-2691-4500
Gang FangDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-2462-9124

Funding

High Resolution Characterization of Bacterial Epigenomes and MicrobiomeR35GM139655 · NIGMS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Gang Fang · 2021 to 2026
$4.9M
NIGMS NIH HHS R35 GM139655
6 · The paper itself

Abstract

Fecal microbiota transplantation (FMT) has revolutionized the treatment of recurrent

Identifiers

PMID40832205
PMCPMC12363690

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.