Evidence mapPaperPMID 40835971Full record

ArticleNature medicine2025

Genetic and molecular landscape of comorbidities in people living with HIV.

Javier Botey-Bataller, Nienke van Unen, Marc Blaauw, Willem A J W Vos, Louise van Eekeren, Nadira Vadaq, Vasiliki Matzaraki, Annelies Verbon, Albert L Groenendijk, Jéssica C Dos Santos and 11 more

Abstract read
In one paragraph

Article in Nature medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. BeyondFrontiers in genetics · 2026
    Review
  8. Metagenomic next-generation sequencing: new horizons in microbiology.Frontiers in cellular and infection microbiology · 2026
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Javier Botey-Bataller *Department of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID http://orcid.org/0000-0003-3512-3150
Nienke van Unen *Department of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID http://orcid.org/0009-0007-8432-8597
Marc BlaauwDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Willem A J W VosDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Louise van EekerenDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Nadira VadaqDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-1746-8844
Vasiliki MatzarakiDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Annelies VerbonDepartment of Internal Medicine and Department of Medical Microbiology and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0003-2242-8342
Albert L GroenendijkDepartment of Internal Medicine and Department of Medical Microbiology and Infectious Diseases, Erasmus Medical Center, Erasmus University, Rotterdam, The Netherlands.ORCID http://orcid.org/0000-0002-2072-2532
Jéssica C Dos SantosDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Maartje C P CleophasDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.
Janneke E StalenhoefDepartment of Internal Medicine, OLVG Hospital, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0003-1486-3045
Marvin A H BerrevoetsDepartment of Internal Medicine, Elisabeth-Tweesteden Hospital, Tilburg, The Netherlands.
Xun JiangDepartment of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID http://orcid.org/0000-0001-5390-946X
Manoj K GuptaDepartment of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID http://orcid.org/0000-0003-1558-9471
Nhan NguyenDepartment of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.ORCID http://orcid.org/0000-0001-8720-1195
Cheng-Jian XuDepartment of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany.
Leo A B JoostenDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-6166-9830
Mihai G NeteaDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-2421-6052
André J A M van der VenDepartment of Internal Medicine and Radboudumc Community for Infectious Diseases, Radboud University Medical Center, Nijmegen, The Netherlands. andre.vanderven@radboudumc.nl.ORCID http://orcid.org/0000-0003-1833-3391
Yang LiDepartment of Computational Biology for Individualised Infection Medicine, Centre for Individualised Infection Medicine, a joint venture between the Hannover Medical School and the Helmholtz Centre for Infection Research, Hannover, Germany. yang.li@helmholtz-hzi.de.ORCID http://orcid.org/0000-0003-4022-7341

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) 390874280Deutsche Forschungsgemeinschaft (German Research Foundation) 497673685EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 833247
6 · The paper itself

Abstract

People living with HIV (PLHIV) have an increased susceptibility to non-AIDS comorbidities. In this study, we systematically profiled 1,342 PLHIV across five omics layers and immune function. We found latent factors, resulting from integrating epigenomics, transcriptomics, proteomics, metabolomics and immune responses, linked to cardiovascular diseases, the presence of carotid plaque and chronic obstructive pulmonary disease in PLHIV. Mapping four omics layers to genetic variation identified 5,962 molecular quantitative trait loci, illustrating a common genetic regulation in PLHIV compared to healthy individuals. By performing Mendelian randomization, we uncovered host genetic-driven changes in baseline molecules causally related to immune responses upon stimulation with inactivated pathogens. Lastly, we uncovered that the inflammasome, genetically regulated by the NLRP12 locus, contributes to systemic inflammation across multiple molecular layers. This study offers a unique catalog of genetic and molecular determinants of immune function in PLHIV and elucidates molecular pathways driving inter-individual variation in immune response and comorbidities.

Indexed as

HIV InfectionsCardiovascular DiseasesComorbidityFemaleGenetic Predisposition to DiseaseHumansInflammasomesInflammationMaleMendelian Randomization AnalysisMetabolomicsMiddle AgedProteomicsPulmonary Disease, Chronic ObstructiveQuantitative Trait LociTranscriptomeInflammasomes

Identifiers

PMID40835971
PMCPMC12532687

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.