Evidence map›Paper›PMID 40849543›Full record

ArticleMolecular psychiatry2026

Histone demethylase PHF2 regulates inflammatory genes in Alzheimer's disease.

Guojun Yang, Yong Ren, Ping Zhong, Prechetas Jai Patel, Xiao-Qing Chen, Lei Wan, Young-Ho Lee, Komal Saleem, Jian Feng, Zhen Yan

Abstract read
In one paragraph

Article in Molecular psychiatry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Guojun YangDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.
Yong RenDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.
Ping ZhongDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-8891-344X
Prechetas Jai PatelDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-5895-5905
Xiao-Qing ChenDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.
Lei WanDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0009-0002-6131-3775
Young-Ho LeeDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0000-0001-6415-4912
Komal SaleemDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-5955-4935
Jian FengDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA.ORCID http://orcid.org/0000-0001-7630-8800
Zhen YanDepartment of Physiology and Biophysics, State University of New York at Buffalo, Jacobs School of Medicine and Biomedical Sciences, Buffalo, NY, USA. zhenyan@buffalo.edu.ORCID http://orcid.org/0000-0002-3519-9596

Funding

Transcriptomic and Circuitry Aberrations in Alzheimer’s DiseaseR01AG079797 · NIA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI JIAN FENG, Zhen Yan · 2023 to 2026
$3.0M
Targeting Histone K4 Methylation for Treatment of Alzheimer's Disease and Related DementiaR01AG064656 · NIA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI YAN, ZHEN · 2019 to 2023
$2.5M
New Treatment Strategy for Alzheimer’s DiseaseR21AG067597 · NIA · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI FENG, JIAN, YAN, ZHEN · 2020 to 2021
$439k
NIA NIH HHS R01 AG064656NIA NIH HHS R01 AG079797NIA NIH HHS R21 AG067597U.S. Department of Health & Human Services | National Institutes of Health (NIH) AG064656U.S. Department of Health & Human Services | National Institutes of Health (NIH) AG067597
6 · The paper itself

Abstract

A plethora of factors contribute to cognitive impairment in Alzheimer's disease (AD), including neuroinflammation, synaptic dysfunction and gene alteration. In search of transcription factors controlling dysregulated genes in AD, we identified that the histone demethylase PHF2 (KDM7C) was a top-ranking candidate. Significant upregulation of PHF2 was found in AD human postmortem tissues, iPSC-derived neurons from AD patients, and a familial AD mouse model (5xFAD). ChIP-seq analysis and quantitative PCR profiling with bidirectional manipulation of Phf2 revealed that Phf2 regulated many genes critically involved in inflammatory pathways and neurodegeneration, including Stat3, Nfkbia, Nfkb2, Tnfrsf1a, Fgfr1, IL6st, Notch2, and Csf1. Knockdown of Phf2 in 5xFAD mice reduced the expression of inflammatory genes, leading to the substantial reduction of microglia/astrocyte activation and the restoration of glutamatergic synaptic function. Behavioral studies showed that Phf2 knockdown in 5xFAD mice significantly improved performance in the Barnes maze test, indicating a mitigation of spatial memory deficits. Our findings have revealed the epigenetic enzyme PHF2 as a regulator of neuroinflammatory processes in AD, linking its activity to both gene expression and cognitive outcomes. It suggests that targeting PHF2 could be a novel therapeutic approach for AD and other brain disorders involving neuroinflammation.

Indexed as

Alzheimer DiseaseHistone DemethylasesAgedAnimalsCognitive DysfunctionDisease Models, AnimalFemaleGene Expression RegulationHumansInflammationMaleMiceMice, TransgenicMicrogliaNeuroinflammatory DiseasesNeuronsHistone Demethylases

Identifiers

PMID40849543
PMCPMC12746590

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.