Evidence map›Paper›PMID 40849682›Full record

ArticleBiophysical journal2025

Dynamical properties of chromatin provide insights into key folding principles.

Sangram Kadam, Soudamini Sahoo, P B Sunil Kumar, Ranjith Padinhateeri

Abstract read
In one paragraph

Article in Biophysical journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Sangram KadamDepartment of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, India.
Soudamini SahooDepartment of Physics and Astronomy, National Institute of Technology Rourkela, Rourkela, India.
P B Sunil KumarDepartment of Physics, Indian Institute of Technology Madras, Chennai, India; Center for Soft and Biological Matter, Indian Institute of Technology Madras, Chennai, India. Electronic address: sunil@iitm.ac.in.
Ranjith PadinhateeriDepartment of Biosciences and Bioengineering, Indian Institute of Technology Bombay, Mumbai, India; Sunita Sanghi Centre of Aging and Neurodegenerative Diseases, Indian Institute of Technology Bombay, Mumbai, India; Koita Centre for Digital Health, Indian Institute of Technology Bombay, Mumbai, India. Electronic address: ranjithp@iitb.ac.in.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Even though the three-dimensional static organization of chromatin is highly studied, chromatin is a dynamic structure, and time-dependent changes are crucial for biological function. Although it is known that both intrachromatin interaction and loop extrusion are crucial to understanding chromatin organization, what their respective roles are in deciding the nature of spatial and temporal organization is not clear. Simulating a model with active loop extrusion and intrachromatin interactions, we show that under certain conditions, the measurable dynamic quantities are dominated by the loop extrusion, even though the population-averaged contact map (structure) can be dominated by intrachromatin interactions, with loop extrusion playing no major role. Our results show that the dynamic scaling exponents with loop extrusion are consistent with the experimental observations and can be very different from those predicted by existing fractal globule models for chromatin. We argue that one needs to measure both the structure and dynamics simultaneously to unambiguously interpret the organization of chromatin.

Indexed as

ChromatinModels, MolecularChromatin

Identifiers

PMID40849682
PMCPMC12709259

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.