Evidence map›Paper›PMID 40877288›Full record

ArticleScientific data2025

Chromosome-level genome assembly of Hippophae salicifolia.

Zhefei Zeng, Chunmin Mao, Jiayin Zhang, Zhongqiong Tian, Min Xu, Wei Li, Junwei Wang, Wenju Zhang, La Qiong

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Zhefei ZengKey Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Xizang University, Lasa, China.
Chunmin MaoYunnan Key Laboratory for Integrative Conservation of Plant Species With Extremely Small Populations, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, China.
Jiayin ZhangMinistry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering and State Key Laboratory of Genetic Engineering, Institute of Biodiversity Sciences and Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, China.
Zhongqiong TianKey Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Xizang University, Lasa, China.
Min XuForestry Survey and Planning Research Institute of Tibet Autonomous Region, Lasa, China.
Wei LiKey Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Xizang University, Lasa, China.ORCID 0000-0003-4310-2544
Junwei WangKey Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Xizang University, Lasa, China. jwyx12240315@126.com.
Wenju ZhangMinistry of Education Key Laboratory of Biodiversity Sciences and Ecological Engineering and State Key Laboratory of Genetic Engineering, Institute of Biodiversity Sciences and Institute of Plant Biology, School of Life Sciences, Fudan University, Shanghai, China. wjzhang@fudan.edu.cn.
La QiongKey Laboratory of Biodiversity and Environment on the Qinghai-Tibetan Plateau, Ministry of Education, School of Ecology and Environment, Xizang University, Lasa, China. lhagchong@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hippophae salicifolia, a dioecious small tree species endemic to the Himalayan region, holds great potential in both ecological conservation and industrial applications. In this study, we employed PacBio HiFi long reads, Illumina short reads, and Hi-C technology to construct a high-quality, chromosome-level reference genome. The assembled genome is approximately 1.11 Gb in size, with a scaffold N50 of 95.29 Mb, and 99.94% of the sequences were successfully anchored to 12 pseudo-chromosomes. A total of 42,547 protein-coding genes were predicted, and approximately 85% of these genes obtained functional annotations. Repetitive elements constituted about 45.25% of the genome, with Long Terminal Repeat (LTR) being the most abundant (32.54%). BUSCO analysis indicated that both the assembly and annotation are highly complete. This high-quality genomic resource provides a valuable foundation for investigating sex determination mechanisms, adaptive evolution, and genomic diversity in H. salicifolia and related species, as well as for advancing genetic improvement, resource conservation, and utilization efforts.

Indexed as

Chromosomes, PlantGenome, PlantHippophaeMolecular Sequence AnnotationRepetitive Sequences, Nucleic Acid

Identifiers

PMID40877288
PMCPMC12394717

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.