Evidence map›Paper›PMID 40877575›Full record

ArticleNature chemistry2025

De novo design of light-responsive protein-protein interactions enables reversible formation of protein assemblies.

Bowen Yu, Jiao Liu, Zhanyuan Cui, Chu Wang, Peipei Chen, Chentong Wang, Yanzhe Zhang, Xingxing Zhu, Ze Zhang, Shichao Li and 4 more

Abstract read
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In one paragraph

Article in Nature chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Article
  7. Precise Regulation of Membrane Proteins: From Physical Technology to Biomolecular Strategy.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Review
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Bowen YuSchool of Life Sciences, Westlake University, Hangzhou, China.ORCID 0000-0002-0852-6280
Jiao LiuSchool of Life Sciences, Westlake University, Hangzhou, China.
Zhanyuan CuiSchool of Life Sciences, Westlake University, Hangzhou, China.
Chu WangSchool of Life Sciences, Westlake University, Hangzhou, China.
Peipei ChenSchool of Communication Engineering, Hangzhou Dianzi University, Hangzhou, China.
Chentong WangSchool of Life Sciences, Westlake University, Hangzhou, China.
Yanzhe ZhangSchool of Life Sciences, Westlake University, Hangzhou, China.
Xingxing ZhuState Key Laboratory of Natural and Biomimetic Drugs, School of Pharmaceutical Sciences, Peking University, Beijing, China.
Ze ZhangSchool of Life Sciences, Westlake University, Hangzhou, China.ORCID 0000-0001-7029-2086
Shichao LiSchool of Life Sciences, Westlake University, Hangzhou, China.
Jinheng PanBiomedical Research Core Facilities, Westlake University, Hangzhou, China.
Mingqi XieSchool of Life Sciences, Westlake University, Hangzhou, China.
Huaizong ShenKey Laboratory of Structural Biology of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou, China.ORCID 0000-0002-1216-5393
Longxing CaoSchool of Life Sciences, Westlake University, Hangzhou, China. caolongxing@westlake.edu.cn.ORCID 0000-0003-4002-3648

Funding

National Natural Science Foundation of China (National Science Foundation of China) 32370989
6 · The paper itself

Abstract

Light-responsive proteins play an essential role in all domains of life by sensing and responding to environmental light signals. However, the de novo design of light-responsive proteins with precisely defined structures and reversible responsive behaviours is an unmet challenge. Here we describe a computational approach to design protein-protein interactions regulated by non-canonical amino acids, focusing on the light-responsive phenylalanine-4'-azobenzene (AzoF). Using this approach, we designed light-responsive cyclic homo-oligomers and heterodimers, which only assemble in AzoF's trans configuration and disassemble when AzoF photoisomerizes to the cis configuration. Biophysical characterization confirms the light-responsive assembly and disassembly of these complexes, and the crystal structures match the design models with atomic accuracy. We demonstrate the applicability of these light-responsive proteins in constructing light-responsive hydrogels and engineering synthetic ligand receptors to optocontrol cell signalling in mammalian cells. Our approach opens avenues for designing environmentally responsive protein structures and broadens the toolkit for optogenetics and optochemistry.

Indexed as

Azo CompoundsLightPhenylalanineProteinsHumansModels, MolecularProtein EngineeringazobenzeneAzo CompoundsPhenylalanineProteins

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.