Evidence map›Paper›PMID 40880467›Full record

ArticleScience advances2025

DKC1-mediated pseudouridylation of rRNA targets hnRNP A1 to sustain IRES-dependent translation and ATF4-driven metabolic adaptation.

Anamika Gupta, Mohit Bansal, Jane Ding, Suman Karki, Madhuparna Pandit, Sunil Sudarshan, Han-Fei Ding

Abstract read
In one paragraph

Article in Science advances, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Anamika GuptaDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0009-0006-2947-9029
Mohit BansalDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0000-0001-8777-1980
Jane DingDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0009-0006-3539-8145
Suman KarkiO'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0000-0003-4393-4041
Madhuparna PanditO'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0009-0009-2093-4250
Sunil SudarshanO'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0000-0001-7257-6277
Han-Fei DingDepartment of Pathology, University of Alabama at Birmingham, Birmingham, AL 35294, USA.ORCID 0000-0001-5702-3439

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
RNA epigenetic regulation of cancer metabolismR01CA190429 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI HAN-FEI DING · 2014 to 2026
$3.7M
Regulation of the Kidney Cancer Epigenome by Oncometabolite L-2-HydroxyglutarateR01CA200653 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI SUNIL SUDARSHAN · 2016 to 2026
$3.6M
BLRD VA I01 BX002930NCI NIH HHS P30 CA013148NCI NIH HHS R01 CA190429NCI NIH HHS R01 CA200653
6 · The paper itself

Abstract

The pseudouridine synthase DKC1 regulates internal ribosome entry site (IRES)-dependent translation and is up-regulated in cancers by the MYC family of oncogenes. The functional significance of DKC1 up-regulation and the mechanistic connection between pseudouridylation and IRES-mediated translation remain poorly understood. Here, we report that DKC1 drives an ATF4-mediated transcriptional program that supports amino acid metabolism and stress adaptation. We identify hnRNP A1, an IRES trans-acting factor, as a critical downstream mediator of DKC1 in sustaining ATF4 expression and IRES-dependent translation. Mechanistically, DKC1-mediated pseudouridylation at two specific 28

Indexed as

Activating Transcription Factor 4Adaptation, PhysiologicalCell Cycle ProteinsHeterogeneous Nuclear Ribonucleoprotein A1Internal Ribosome Entry SitesProtein BiosynthesisRNA, RibosomalCell Line, TumorHumansNuclear ProteinsActivating Transcription Factor 4ATF4 protein, humanCell Cycle ProteinsDKC1 protein, humanHeterogeneous Nuclear Ribonucleoprotein A1hnRNPA1 protein, humanInternal Ribosome Entry SitesNuclear ProteinsRNA, Ribosomal

Identifiers

PMID40880467
PMCPMC12396317

What Socratic holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.