Evidence map›Paper›PMID 40881353›Full record

ArticleCell reports. Physical science2025

The dimerization domain of SARS-CoV-2 nucleocapsid protein is partially disordered and forms a dynamic high-affinity dimer.

Jasmine Cubuk, J Jeremías Incicco, Kathleen B Hall, Alex S Holehouse, Melissa D Stuchell-Brereton, Andrea Soranno

Abstract read
In one paragraph

Article in Cell reports. Physical science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Evolution of a fuzzy ribonucleoprotein complex in viral assembly.bioRxiv : the preprint server for biology · 2025
    Article
  5. Article
  6. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Jasmine CubukDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.
J Jeremías InciccoDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.
Kathleen B HallDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.
Alex S HolehouseDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.
Melissa D Stuchell-BreretonDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.
Andrea SorannoDepartment of Biochemistry and Molecular Biophysics, Washington University in St. Louis, 660 Euclid Avenue, St. Louis, MO 63110, USA.

Funding

A multipronged investigation of SARS-CoV-2 genome packagingR01AI163142 · NIAID · WASHINGTON UNIVERSITY · PI Andrea Soranno · 2022 to 2026
$3.1M
NIAID NIH HHS R01 AI163142
6 · The paper itself

Abstract

The SARS-CoV-2 nucleocapsid (N) drives the compaction and packaging of the viral genome. Here, we focused on quantifying the mechanisms that control dimer formation utilizing single-molecule Förster resonance energy transfer to investigate the conformations and energetics of the dimerization domain in the context of the full-length protein. Under monomeric conditions, we observed significantly expanded configurations of the dimerization domain (compared to the folded dimer structure), which is consistent with a dynamic conformational ensemble. The addition of unlabeled protein stabilizes a folded dimer configuration with a high mean transfer efficiency, which is in agreement with predictions based on known structures. Dimerization is characterized by a dissociation constant of ~12 nM at 23°C and is driven by strong enthalpic interactions between the two protein subunits, which originate from the coupled folding and binding. We propose that the retained flexibility of the dimer can affect its interaction with RNA and phase separation propensity.

Identifiers

PMID40881353
PMCPMC12385586

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.