Evidence map›Paper›PMID 40889130›Full record

ArticleeLife2025

Coral anthozoan-specific opsins employ a novel chloride counterion for spectral tuning.

Yusuke Sakai, Saumik Sen, Tomohiro Sugihara, Yukiya Kakeyama, Makoto Iwasaki, Gebhard F X Schertler, Xavier Deupi, Mitsumasa Koyanagi, Akihisa Terakita

Abstract read
In one paragraph

Article in eLife, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yusuke SakaiDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.ORCID https://orcid.org/0000-0002-7092-0094
Saumik SenSwiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.
Tomohiro SugiharaDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.
Yukiya KakeyamaDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.
Makoto IwasakiDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.
Gebhard F X SchertlerLaboratory of Biomolecular Research, PSI Center for Life Sciences, Villigen PSI, Switzerland.ORCID https://orcid.org/0000-0002-5846-6810
Xavier DeupiSwiss Institute of Bioinformatics (SIB), Lausanne, Switzerland.ORCID https://orcid.org/0000-0003-4572-9316
Mitsumasa KoyanagiDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.ORCID https://orcid.org/0000-0002-7741-918X
Akihisa TerakitaDepartment of Biology, Graduate School of Science, Osaka Metropolitan University, Sumiyoshi ku, Osaka, Japan.ORCID https://orcid.org/0000-0002-8379-8913

Funding

Horizon 2020 Framework Programme 10.3030/951644Horizon 2020 Framework Programme Marie Skłodowska-Curie grant agreement 884104 (PSI-FELLOW-III-3i)Japan Science and Technology Agency Core Research for Evolutional Science and Technology (CREST) Grant JPMJCR1753Ministry of Education, Culture, Sports, Science and Technology Grants-in-Aid for Scientific Research 22H02663Ministry of Education, Culture, Sports, Science and Technology Grants-in-Aid for Scientific Research 23H02516Ministry of Education, Culture, Sports, Science and Technology Grants-in-Aid for Scientific Research JP20J01841Swiss National Science Foundation project grant 192780
6 · The paper itself

Abstract

Animal opsins are G protein-coupled receptors that have evolved to sense light by covalently binding a retinal chromophore via a protonated (positively charged) Schiff base. A negatively charged amino acid in the opsin, acting as a counterion, stabilizes the proton on the Schiff base, which is essential for sensitivity to visible light. In this study, we investigate the spectroscopic properties of a unique class of opsins from a reef-building coral belonging to the anthozoan-specific opsin II group (ASO-II opsins), which intriguingly lack a counterion residue at any of established sites. Our findings reveal that, unlike other known animal opsins, the protonated state of the Schiff base in visible light-sensitive ASO-II opsins is highly dependent on exogenously supplied chloride ions (Cl

Indexed as

AnthozoaChloridesOpsinsAnimalsLightProtonsSchiff BasesChloridesOpsinsProtonsSchiff Basesbiochemistrychemical biologycoralcounterionGPCRmolecular biophysicsopsinspectroscopystructural biology

Identifiers

PMID40889130
PMCPMC12401545

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.