Evidence map›Paper›PMID 40904830›Full record

ArticleBiomedical reports2025

Conserved methylation signature accurately predicts heavily irradiated CNS tumour with perplexing histopathology: A case report.

Handoko Handoko, Eka Susanto, Renindra Ananda Aman, Tiara Aninditha, Heri Wibowo, Tiara Bunga Mayang Permata, Soehartati A Gondhowiardjo

Abstract read
In one paragraph

Article in Biomedical reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Handoko HandokoDepartment of Radiation Oncology, Faculty of Medicine, Cipto Mangunkusumo National General Hospital, University of Indonesia, Jakarta 10430, Indonesia.
Eka SusantoDepartment of Anatomical Pathology, Faculty of Medicine, Cipto Mangunkusumo National General Hospital, University of Indonesia, Jakarta 10430, Indonesia.
Renindra Ananda AmanDepartment of Neurosurgery, Cipto Mangunkusumo National General Hospital, Faculty of Medicine, University of Indonesia, Jakarta 10430, Indonesia.
Tiara AnindithaDepartment of Neurology, Cipto Mangunkusumo National General Hospital, Faculty of Medicine, University of Indonesia, Jakarta 10430, Indonesia.
Heri WibowoIntegrated Laboratory, Faculty of Medicine, University of Indonesia, Jakarta 10430, Indonesia.
Tiara Bunga Mayang PermataDepartment of Radiation Oncology, Faculty of Medicine, Cipto Mangunkusumo National General Hospital, University of Indonesia, Jakarta 10430, Indonesia.
Soehartati A GondhowiardjoDepartment of Radiation Oncology, Faculty of Medicine, Cipto Mangunkusumo National General Hospital, University of Indonesia, Jakarta 10430, Indonesia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diagnosing central nervous system (CNS) tumours post-radiation therapy is often complicated by treatment-induced histological changes. Molecular diagnostics, such as methylation profiling, offer robust tools to aid in accurate tumour classification. The present study reported a case of a 48-year-old woman with a recurrent parasellar mass previously treated with stereotactic radiosurgery. Despite imaging suggestive of meningioma, histopathology and immunohistochemistry yielded ambiguous findings. Low-coverage whole genome methylation profiling using Oxford Nanopore sequencing provided a conclusive diagnosis of meningioma, with a classifier confidence score of 0.791, supported by t-distributed stochastic neighbor embedding clustering and characteristic copy number variations. The present case illustrated the diagnostic utility of methylation profiling in post-treatment CNS tumours with perplexing histopathology. Integration of molecular diagnostics can enhance classification accuracy and inform clinical decision-making.

Indexed as

central nervous system tumourmeningiomamethylation profilingmolecular diagnosticsnanopore sequencingradiation

Identifiers

PMID40904830
PMCPMC12402683

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.