Evidence map›Paper›PMID 40909159›Full record

ArticleArXiv2025

Suppression of errors in collectively coded information.

Martin J Falk, Leon Zhou, Yoshiya J Matsubara, Kabir Husain, Jack W Szostak, Arvind Murugan

Abstract readPreprint
In one paragraph

Article in ArXiv, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Martin J FalkDepartment of Physics, The University of Chicago, Chicago, IL 60637.
Leon ZhouDepartment of Physics, The University of Chicago, Chicago, IL 60637.
Yoshiya J MatsubaraDepartment of Physics, The University of Chicago, Chicago, IL 60637.
Kabir HusainDepartment of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom.
Jack W SzostakHoward Hughes Medical Institute, Dept. of Chemistry, The University of Chicago, Chicago, IL 60637.
Arvind MuruganDepartment of Physics, The University of Chicago, Chicago, IL 60637.

Funding

Revealing mechanisms of specificity and adaptability in molecular information processing through data-driven modelsR35GM151211 · NIGMS · UNIVERSITY OF CHICAGO · PI Arvind Murugan · 2023 to 2026
$1.5M
NIGMS NIH HHS R35 GM151211
6 · The paper itself

Abstract

Modern life largely transmits genetic information from mother to daughter through the duplication of single physically intact molecules that encode information. However, copying an extended molecule requires complex copying machinery and high fidelity that scales with the genome size to avoid the error catastrophe. Here, we explore these fidelity requirements in an alternative architecture, the virtual circular genome, in which no one physical molecule encodes the full genetic information. Instead, information is encoded and transmitted in a collective of overlapping and interacting segments. Using a model experimental system of a complex mixture of DNA oligomers that can partly anneal and extend off each other, we find that mutant oligomers are suppressed relative to a model without collective encoding. Through simulations and theory, we show that this suppression of mutants can be explained by competition for productive binding partners. As a consequence, information can be propagated robustly in a virtual circular genome even at mutation rates expected under prebiotic conditions.

Identifiers

PMID40909159
PMCPMC12407629

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.