Evidence map›Paper›PMID 40909474›Full record

ArticlebioRxiv : the preprint server for biology2025

ComBat-Predict enhances generalizability of neuroimaging models to new sites.

Yao Xin, Margaret Gardner, Nick Tustison, Philip Cook, James Gee, Andreana Benitez, Jens H Jensen, Alzheimer’s Disease Neuroimaging Initiative, Lifespan Brain Chart Consortium, Richard Bethlehem, Jakob Seidlitz and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Yao XinDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC, USA.ORCID 0000-0001-7594-4899
Margaret GardnerBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA.
Nick TustisonDepartment of Radiology & Medical Imaging, University of Virginia, Charlottesville, VA, USA.
Philip CookDepartment of Radiology, University of Pennsylvania, Philadelphia, PA, USA.
James GeeDepartment of Radiology, University of Pennsylvania, Philadelphia, PA, USA.
Andreana BenitezDepartment of Neurology, Medical University of South Carolina, Charleston, SC, USA.
Jens H JensenDepartment of Neuroscience, Medical University of South Carolina, Charleston, SC, USA.
Alzheimer’s Disease Neuroimaging Initiative, Lifespan Brain Chart Consortium
Richard BethlehemDepartment of Psychology, University of Cambridge, Cambridge, UK.
Jakob SeidlitzBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA.
Aaron F Alexander-BlochBrain-Gene-Development Lab, The Children's Hospital of Philadelphia and Penn Medicine, Philadelphia, PA, USA.
Andrew An ChenDepartment of Public Health Sciences, Medical University of South Carolina, Charleston, SC, USA.

Funding

The Genetics of Personalized Functional MRI NetworksR01MH132934 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2023 to 2026
$4.2M
Harmonization of Multi-Site Neuroimaging Data from Complex Study DesignsR01MH123550 · NIMH · UNIVERSITY OF PENNSYLVANIA · PI SHINOHARA, RUSSELL TAKESHI · 2020 to 2025
$4.0M
Precision brain charts for imaging-genomics of schizophrenia and the psychosis spectrumR01MH133843 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2023 to 2026
$3.2M
Radiomics for Clinically-Acquired Brain MRIs of Youth with Neurodevelopmental DisordersR01MH134896 · NIMH · CHILDREN'S HOSP OF PHILADELPHIA · PI Aaron Felix Alexander-Bloch · 2024 to 2026
$2.3M
NIMH NIH HHS R01 MH123550NIMH NIH HHS R01 MH132934NIMH NIH HHS R01 MH133843NIMH NIH HHS R01 MH134896
6 · The paper itself

Abstract

Neuroimaging is vital in quantifying brain atrophy due to typical aging and due to neurodegenerative diseases. To collect large samples necessary to model lifespan brain development, research consortiums aggregate images acquired across multiple study sites. Previous studies have demonstrated that this multi-site study design can lead to site-related bias, necessitating harmonization of these "site effects". However, current methodologies are unable to generalize to new sites outside the original harmonized sample, limiting translation to new sites or clinical practice. Here, we propose a method called ComBat-Predict (CB-Predict) building upon the ComBat method for site effect adjustment, which extends to data from a new site with smaller sample sizes and unknown site effects. In data from the Alzheimer's Disease Neuroimaging Initiative (ADNI), our proposed method mitigates bias and yields high accuracy in predicting cortical thickness measures when generalizing the model to new data. Furthermore, we demonstrate that our proposed harmonization method can reduce site-related variance in centile scores estimated using data from the Lifespan Brain Chart Consortium (LBCC). Altogether, our results demonstrate that CB-Predict effectively harmonizes new sites and thereby enables effective translation of neuroimaging models to additional samples.

Indexed as

ADNIComBatcortical thicknessNeuroimagingnormative modelingsite effects

Identifiers

PMID40909474
PMCPMC12407725

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.