Evidence map›Paper›PMID 40935155›Full record

ArticleJournal of chemical theory and computation2025

Simulating Metal Complex Formation and Ligand Exchange: Unraveling the Interplay between Entropy, Kinetics, and Mechanisms on the Chelate Effect.

Luca Sagresti, Luca Benedetti, Kenneth M Merz, Giuseppe Brancato

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Luca SagrestiScuola Normale Superiore, Piazza Dei Cavalieri 7, Pisa I-56126, Italy.
Luca BenedettiScuola Normale Superiore, Piazza Dei Cavalieri 7, Pisa I-56126, Italy.
Kenneth M MerzDepartment of Chemistry, Michigan State University, Street, East Lansing 48824, Michigan, United States.
Giuseppe BrancatoScuola Normale Superiore, Piazza Dei Cavalieri 7, Pisa I-56126, Italy.ORCID 0000-0001-8059-2517

Funding

Modeling Transition Metal Ion Binding to ProteinsR01GM130641 · NIGMS · MICHIGAN STATE UNIVERSITY · PI KENNETH M. MERZ · 2019 to 2026
$2.5M
NIGMS NIH HHS R01 GM130641
6 · The paper itself

Abstract

Metal coordination is ubiquitous in Nature and central in many applications, ranging from nanotechnology to catalysis and environmental chemistry. Complex formation results from the subtle interplay between different thermodynamic, kinetic, and mechanistic contributions, which remain largely elusive to standard experimental methodologies and challenging for typical modeling approaches. Here, considering some prototypical metal complexes between Cd(II) and Ni(II) with various amine ligands, we present a comprehensive atomistic-level description of their chemical equilibrium, complex formation, and ligand exchange dynamics in aqueous solution, providing an excellent agreement with available association constants and formation rates spanning several orders of magnitude. This is achieved through an effective molecular simulation approach that combines finely tuned interatomic potentials with state-of-the-art enhanced sampling and kinetics techniques. Worthy of note, the nature of the chelate effect, a fundamental concept in coordination chemistry, is fully unravelled through the comparative analysis of the ligand binding reactions of monodentate and bidentate ligands in octahedral complexes. Results provide a complete picture illustrating all the concurrent contributions to this phenomenon, such as entropy, dissociation rates, and ligand binding mechanisms, in some cases contradicting previously held beliefs. This study represents a step forward for the

Identifiers

PMID40935155
PMCPMC12461782

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.