Evidence map›Paper›PMID 40943322›Full record

ArticleInternational journal of molecular sciences2025

CDKL5 Deficiency Disorder: Revealing the Molecular Mechanism of Pathogenic Variants.

Shamrat Kumar Paul, Shailesh Kumar Panday, Luigi Boccuto, Emil Alexov

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Shamrat Kumar PaulDepartment of Physics and Astronomy, College of Science, Clemson University, Clemson, SC 29634, USA.
Shailesh Kumar PandayDepartment of Physics and Astronomy, College of Science, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0003-3099-8679
Luigi BoccutoMedical Biophysics Graduate Program, College of Science, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0003-2017-4270
Emil AlexovDepartment of Physics and Astronomy, College of Science, Clemson University, Clemson, SC 29634, USA.ORCID 0000-0001-5346-0156

Funding

DelPhi and associated resources: maintenance, development and applicationsR35GM151964 · NIGMS · CLEMSON UNIVERSITY · PI Emil Georgiev Alexov · 2024 to 2026
$1.1M
NIGMS NIH HHS R35 GM151964NIH HHS R35GM151964
6 · The paper itself

Abstract

Cyclin-dependent kinase-like 5 (CDKL5) deficiency disorder, which is a developmental and epileptic encephalopathy occurring in 1 in every 40,000 to 60,000 live births, was the subject of this computational investigation. This study provided a comprehensive list of missense variants (156) seen in the human population within the CDKL5 protein. Furthermore, the list of CDKL5 binding partners was updated to include four new entries. Computational modeling resulted in 3D structure models of twenty-four CDKL5-target protein complexes. The CDKL5 stability changes upon the above-mentioned missense mutations that were modeled, and it was shown that the corresponding folding free energy changes (ΔΔG

Indexed as

Epileptic SyndromesMuscle HypotoniaProtein Serine-Threonine KinasesSpasms, InfantileHumansModels, MolecularMutation, MissenseProtein BindingProtein ConformationThermodynamicsCDKL5 protein, humanProtein Serine-Threonine Kinases3D structure modelbinding free energyCDKL5CDKL5 deficiency syndromefolding free energyin silico modelingmissense mutationpathogenic variant

Identifiers

PMID40943322
PMCPMC12429097

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.