Evidence map›Paper›PMID 40947699›Full record

ArticleCurrent medicinal chemistry2026

The Impact of IGFBP6 Knockdown on Cholesterol Metabolism in Breast Cancer Cells.

Ivan Denisovich Antipenko, Julia Alekseevna Makarova, Maxim Yurievich Shkurnikov, Alexander Grigorievich Tonevitsky

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Article in Current medicinal chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

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0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Ivan Denisovich AntipenkoLaboratory for Research on Molecular Mechanisms of Longevity, Faculty of Biology and Biotechnology, HSE University, Moscow, Russia.ORCID 0009-0002-1139-6162
Julia Alekseevna MakarovaJoint Department with RAS Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Faculty of Biology and Biotechnology, HSE University, Moscow, Russia.ORCID 0000-0003-4497-3421
Maxim Yurievich ShkurnikovLaboratory for Research on Molecular Mechanisms of Longevity, Faculty of Biology and Biotechnology, HSE University, Moscow, Russia.ORCID 0000-0002-6668-5028
Alexander Grigorievich TonevitskyLaboratory for Research on Molecular Mechanisms of Longevity, Faculty of Biology and Biotechnology, HSE University, Moscow, Russia.ORCID 0000-0002-7079-7145

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionCholesterol plays a key role in maintaining tumor cell homeostasis. Reduced IGFBP6 expression is associated with an increased risk of breast cancer recurrence. Previous studies showed that IGFBP6 knockdown decreases cholesterol levels in the MDA-MB-231 cell line. This study aimed to investigate how IGFBP6 influences genes involved in cholesterol metabolism.

methodsWe used MDA-MB-231 breast cancer cells with IGFBP6 knockdown. Transcriptomic and proteomic analyses were performed, with selected gene expression validated by RT-PCR. Correlations between IGFBP6 and cholesterol-related genes were evaluated using public RNA-seq datasets.

resultsIGFBP6 knockdown in MDA-MB-231 cells resulted in a threefold decrease in low-density lipoprotein receptor (LDLR) expression and a twofold reduction in LDLR adaptor protein (LDLRAP1) mRNA levels, both responsible for exogenous cholesterol uptake. Meanwhile, PCSK9 expression increased 11-fold (p-adj = 1.4E-93), further limiting uptake. Despite the upregulation of genes involved in endogenous cholesterol synthesis (HMGCS1, HMGCR, FDFT1, SQLE, DHCR24), total cholesterol content in knockdown cells decreased, leading to activation of the sterol-dependent transcription factor SREBF1 (OR = 6.44; p-adj = 0.036). Correlation analysis revealed a significant association between IGFBP6 expression and cholesterol synthesis genes in basal-like breast cancer. DISCUSSION: The altered expression profile of multiple cholesterol metabolism-related genes with known prognostic value aligns with a transcriptional program typical of poor-outcome basal-like tumors. These findings support the role of IGFBP6 as a regulator of lipid metabolism and a potential biomarker for therapeutic stratification.

conclusionThe results of this study indicate that the reduction in cholesterol levels observed in breast cancer cells following IGFBP6 knockdown is primarily due to decreased exogenous uptake. These findings highlight the role of IGFBP6 in regulating cholesterol metabolism and further explain its clinical significance in predicting breast cancer recurrence and progression.

Indexed as

Breast NeoplasmsCholesterolInsulin-Like Growth Factor Binding Protein 6Adaptor Proteins, Signal TransducingCell Line, TumorFemaleGene Expression Regulation, NeoplasticGene Knockdown TechniquesHumansMDA-MB-231 CellsNerve Tissue ProteinsOxidoreductases Acting on CH-CH Group DonorsProprotein Convertase 9Receptors, LDLAdaptor Proteins, Signal TransducingCholesterolInsulin-Like Growth Factor Binding Protein 6LDLRAP1 protein, humanLDLR protein, humanNerve Tissue ProteinsOxidoreductases Acting on CH-CH Group DonorsPCSK9 protein, humanProprotein Convertase 9Receptors, LDLBreast cancercholesterolIGFBP6low-density lipoproteinsPCSK9recurrence

Identifiers

PMID40947699

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.