Evidence map›Paper›PMID 40964348›Full record

ArticlebioRxiv : the preprint server for biology2025

Integration of localized microbiome, metabolome, and clinical datasets predicts healing in chronic wounds among veterans.

Catherine B Anders, Hannah L Smith, Jeremy Boyd, Michael C Davis, Tyler M W Lawton, Chiachi Hwang, Margaret M Doucette, Mary Cloud B Ammons

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Catherine B AndersResearch Service, Boise VA Medical Center (BVAMC), Boise, ID.
Hannah L SmithIdaho Veterans Research & Education Foundation (IVREF), Boise VA Medical Center (BVAMC), Boise, ID.
Jeremy BoydIdaho Veterans Research & Education Foundation (IVREF), Boise VA Medical Center (BVAMC), Boise, ID.
Michael C DavisResearch Service, Boise VA Medical Center (BVAMC), Boise, ID.
Tyler M W LawtonIdaho Veterans Research & Education Foundation (IVREF), Boise VA Medical Center (BVAMC), Boise, ID.
Chiachi HwangCenter for Biofilm Engineering, Montana State University, Bozeman, MT.
Margaret M DoucetteResearch Service, Boise VA Medical Center (BVAMC), Boise, ID.
Mary Cloud B AmmonsResearch Service, Boise VA Medical Center (BVAMC), Boise, ID.ORCID 0000-0002-9717-0844

Funding

Women's health: interplay of maternal diet and key demographics on neurological health in the rural frontier and remote WestP20GM103408 · NIGMS · UNIVERSITY OF IDAHO · PI Kenneth A Cornell · 2012 to 2026
$59.8M
The role of the innate immune response in adenovirus Ad14p1 immunopathogenesisP20GM109007 · NIGMS · IDAHO VETERANS RESEARCH / EDUCATION FDN · PI STEVENS, DENNIS L · 2016 to 2021
$10.0M
Metabolomic Analysis as a Tool to Understanding the Use of Novel Therapeutics in a Host-Pathogen Model of the Chronic Wound EnvironmentK01GM103821 · NIGMS · MONTANA STATE UNIVERSITY - BOZEMAN · PI AMMONS, MARY CLOUD BOSWORTH · 2012 to 2016
$490k
Understanding and Integrating the Metabolome, Microbiome, and Innate Immunity in Diabetic WoundsR03AI135998 · NIAID · IDAHO VETERANS RESEARCH / EDUCATION FDN · PI AMMONS, MARY CLOUD BOSWORTH · 2018 to 2019
$139k
BLRD VA IK6 BX005244NIAID NIH HHS R03 AI135998NIGMS NIH HHS K01 GM103821NIGMS NIH HHS P20 GM103408NIGMS NIH HHS P20 GM109007
6 · The paper itself

Abstract

The chronic wound microenvironment consists of a complex milieu of host cells, microbial species, and metabolites. While much is known about wound microbiomes, our knowledge of metabolic landscapes influencing wound healing is limited. Furthermore, integrating complex datasets into predictive models of wound healing is almost non-existent. Microbial rRNA and total metabolites were extracted from 45 diabetic foot ulcers (DFU) debridement samples from 13 patients, with 25 from non-healing wounds and 20 from healing wounds that remained closed for over 30 days. 16S rRNA sequencing and global metabolomics were performed and clinical metadata collected. Healing outcome was modeled as a function of three blocks of features (N = 21 clinical, 634 microbiome, and 865 metabolome) using DIABLO (

Identifiers

PMID40964348
PMCPMC12439902

What Socratic holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.