Evidence mapPaperPMID 40966518Full record

ArticleNucleic acids research2025

INO80/SWR remodelers regulate Pol II transcription through BRD2 and chromatin landscape.

Meitong Liu, Qiqin Xu, Hui Wang, Xiong Ji

Abstract read
In one paragraph

Article in Nucleic acids research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Meitong LiuState Key Laboratory of Gene Function and Modulation Research, Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.
Qiqin XuState Key Laboratory of Gene Function and Modulation Research, Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.
Hui WangState Key Laboratory of Gene Function and Modulation Research, Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.
Xiong JiState Key Laboratory of Gene Function and Modulation Research, Key Laboratory of Cell Proliferation and Differentiation of the Ministry of Education, Beijing Advanced Center of RNA Biology (BEACON), School of Life Sciences, Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China.ORCID 0000-0003-3404-7993

Funding

Beijing Advanced Center of RNA BiologyInnovation Fund of Chengdu Research InstituteKey Laboratory of Cell Proliferation and DifferentiationNational Key R&D Program of ChinaNational Natural Science Foundation of China 2024YFA1106903National Natural Science Foundation of China 32170569National Natural Science Foundation of China 32350003Peking-Tsinghua Center for Life SciencesPeking UniversityQidong-SLS Innovation FundState Key Laboratory of Gene Function and Modulation Research
6 · The paper itself

Abstract

INO80/SWR remodelers, including INO80, P400/TIP60, and SRCAP, have been viewed to regulate H2A.Z dynamics, but how they control specific gene expression remains unclear. Here, we reveal distinct phenotypes arising from short- and long-term perturbations following the depletion of INO80/SWR remodelers. We identified the direct target genes of INO80, P400, and SRCAP remodelers. Mechanistically, we found that INO80/SWR remodelers interact and facilitate the chromatin occupancy of the H2A.Zac reader protein BRD2, thereby elucidating the regulation of Pol II transcription by INO80/SWR remodelers. Additionally, while the degradation of P400 or SRCAP led to a reduction in H2A.Zac, INO80 depletion did not affect H2A.Zac occupancy but decreased the occupancy of P400 and SRCAP. Collectively, our findings suggest that INO80/SWR remodelers primarily regulate the chromatin landscape and influences BRD2 chromatin binding, thereby shedding light on their mechanisms in Pol II transcription regulation during development and disease.

Indexed as

ChromatinChromatin Assembly and DisassemblyDNA HelicasesDNA Polymerase IIRNA Polymerase IITranscription, GeneticATPases Associated with Diverse Cellular ActivitiesBromodomain Containing ProteinsDNA-Binding ProteinsHistonesHumansTranscription FactorsATPases Associated with Diverse Cellular ActivitiesBRD2 protein, humanBromodomain Containing ProteinsChromatinDNA-Binding ProteinsDNA HelicasesDNA Polymerase IIHistonesINO80 protein, humanRNA Polymerase IITranscription Factors

Identifiers

PMID40966518
PMCPMC12448918

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.