Evidence mapPaperPMID 40969769Full record

ArticleFrontiers in immunology2025

Diagnostic lncRNA biomarkers and immune-related ceRNA networks for osteonecrosis of the femoral head in metabolic syndrome identified by plasma RNA sequencing and machine learning.

Haoyan Sun, Meng Xu, Dianlong Mi, Qingyu Li, Haipeng Sun, Yang Song

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Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

What it found

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Haoyan Sun *Orthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.
Meng Xu *Orthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.
Dianlong MiOrthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.
Qingyu LiOrthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.
Haipeng SunOrthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.
Yang SongOrthopedic Medical Center, The Second Affiliated Hospital of Jilin University, Changchun, Jilin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Osteonecrosis of the femoral head (ONFH) is a disabling orthopedic condition that remains challenging to diagnose at an early stage. Recent evidence suggests that immune dysregulation plays a central role in the development of both ONFH and metabolic syndrome (MetS), a cluster of metabolic abnormalities associated with increased ONFH risk. However, reliable noninvasive diagnostic biomarkers for ONFH, particularly in high-risk MetS populations, are still lacking. This study aimed to identify key diagnostic long non-coding RNAs (lncRNAs) in ONFH patients with MetS and to construct an immune-related competitive endogenous RNA (ceRNA) network. Plasma lncRNA and mRNA expression profiles from 9 ONFH patients and 6 healthy controls were analyzed to identify differentially expressed lncRNAs (DElncRNAs) and mRNAs (DEmRNAs), followed by ceRNA network construction. The MetS dataset from the Gene Expression Omnibus (GEO) was integrated, and weighted gene co-expression network analysis (WGCNA), functional enrichment, protein-protein interaction (PPI) network analysis, MCODE, CytoHubba-MCC, and random forest (RF) algorithms were employed to identify hub mRNAs and their associated lncRNAs. A nomogram model was developed, and diagnostic potential was evaluated using receiver operating characteristic (ROC) analysis and validation in an independent cohort (45 ONFH and 45 control samples). A total of 424 DElncRNAs and 1,431 DEmRNAs were identified, and a ceRNA network involving 7 lncRNAs, 24 miRNAs, and 683 mRNAs was constructed. Integration with the MetS dataset yielded 506 intersecting mRNAs, from which 11 hub mRNAs and 6 related lncRNAs were screened. Five key lncRNAs were selected by RF analysis to construct a diagnostic model with strong predictive performance (AUC > 0.7 in both RNA-seq and qRT-PCR validation). The immune-related ceRNA network also demonstrated significant associations with immune cell infiltration patterns. In conclusion, five candidate lncRNAs (MRPS30-DT, LINC01106, MIR100HG, WDR11-AS1, and PELATON) were identified as promising noninvasive diagnostic biomarkers for ONFH in MetS populations. These findings offer novel insights into immune-related regulatory mechanisms and may support early diagnosis using peripheral blood.

Indexed as

Femur Head NecrosisGene Regulatory NetworksMachine LearningMetabolic SyndromeRNA, Long NoncodingAdultBiomarkersCase-Control StudiesComputational BiologyFemaleGene Expression ProfilingHumansMaleMiddle AgedNomogramsProtein Interaction MapsBiomarkersRNA, Competitive EndogenousRNA, Long NoncodingRNA, Messengerdiagnostic biomarkerimmune infiltrationlncRNAmetabolic syndromeosteonecrosis of the femoral head

Identifiers

PMID40969769
PMCPMC12440747

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.