Evidence map›Paper›PMID 40970438›Full record

ArticleProtein science : a publication of the Protein Society2025

Structure-function relationship of the Pseudomonas aeruginosa AsmA-like proteins YhdP and YdbH involved in outer membrane biogenesis.

Davide Sposato, Camilla Pederzoli, Marianna Bufano, Pietro Sciò, Ludovica Rossi, Livia Leoni, Giordano Rampioni, Paolo Visca, Antonio Coluccia, Francesco Imperi

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. YdbL directly modulates YdbH-YnbE bridge formation to maintainbioRxiv : the preprint server for biology · 2026
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Davide SposatoDepartment of Science, University Roma Tre, Rome, Italy.
Camilla PederzoliDepartment of Science, University Roma Tre, Rome, Italy.
Marianna BufanoDepartment of Drug Chemistry and Technologies, Sapienza University of Rome, Rome, Italy.
Pietro SciòDepartment of Drug Chemistry and Technologies, Sapienza University of Rome, Rome, Italy.
Ludovica RossiDepartment of Science, University Roma Tre, Rome, Italy.
Livia LeoniDepartment of Science, University Roma Tre, Rome, Italy.
Giordano RampioniDepartment of Science, University Roma Tre, Rome, Italy.
Paolo ViscaDepartment of Science, University Roma Tre, Rome, Italy.
Antonio ColucciaDepartment of Drug Chemistry and Technologies, Sapienza University of Rome, Rome, Italy.
Francesco ImperiDepartment of Science, University Roma Tre, Rome, Italy.ORCID 0000-0001-5080-5665

Funding

Fondazione per la Ricerca sulla Fibrosi Cistica FFC#6/2023Ministero dell'Università e della Ricerca PRIN 2020 (20208LLXEJ)Ministero dell'Università e della Ricerca PRIN 2022 (20224BYR59/2022C5PNXB)National Biodiversity Future Center CN00000033Rome Technopole F83B22000040006
6 · The paper itself

Abstract

The outer membrane (OM) of Gram-negative bacteria is an asymmetric bilayer composed of glycerophospholipids (GPLs) in the inner leaflet and lipopolysaccharide in the outer leaflet, which is critical for viability and antibiotic resistance. While the mechanisms for lipopolysaccharide and OM protein transport across the periplasm are well characterized, it has only recently been proposed that AsmA-like proteins are likely involved in the anterograde transport of GPLs. Here, we investigated the structural and functional features of Pseudomonas aeruginosa YhdP, an AsmA-like protein that exhibits higher activity in maintaining OM integrity than its paralogs. Through structural predictions, molecular dynamics simulations, and genetic complementation assays, we demonstrated that two hydrophobic α-helices at the C-terminal region of YhdP are crucial for its function. Moreover, we found that fusing the YhdP C-terminal domain to YdbH enhances the functionality of this shorter and lower-activity AsmA-like protein. Specifically, a YdbH-YhdP fusion protein long enough to potentially span the periplasmic space was more active than the wild-type YdbH protein in promoting growth and OM integrity. Furthermore, while YdbH activity requires the OM protein partner YnbE, the functionality of the YdbH-YhdP fusion protein is YnbE-independent. These findings support the hypothesis that the YhdP C-terminus provides OM anchoring and likely assists GPL insertion, and prove that it can be used as a modular element for improving the activity of other AsmA-like proteins. Our work sheds light on the molecular determinants of GPL transport and offers a framework for studying the mode of action of AsmA-like proteins in OM biogenesis.

Indexed as

Bacterial Outer MembraneBacterial Outer Membrane ProteinsBacterial ProteinsPseudomonas aeruginosaMolecular Dynamics SimulationStructure-Activity RelationshipBacterial Outer Membrane ProteinsBacterial Proteinsanterograde transportEscherichia coliglycerophospholipidsGram‐negative bacteriahybrid proteinsmolecular dynamics simulationsouter membrane integrityperiplasmPseudomonas aeruginosastructure–function relationship

Identifiers

PMID40970438
PMCPMC12447247

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.