Evidence map›Paper›PMID 40970901›Full record

ArticleACS chemical biology2025

Phylogenomic Identification of a Highly Conserved Copper-Binding RiPP Biosynthetic Gene Cluster in Marine

Yifan Tang, Weimao Zhong, Longping Fu, Emmanuel Asante, Anastasiia Kostenko, F N U Vidya, Paige Mandelare-Ruiz, Tamilore T Adeogun, Gabriel P Anderson, Benjamin E Edmonds and 22 more

Abstract read
In one paragraph

Article in ACS chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Thiooxazole Formation on a NontypeablebioRxiv : the preprint server for biology · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Co-opting the bacterial lipoprotein pathway for the biosynthesis of lipidated macrocyclic peptides.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors.

Yifan TangSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0000-0002-2528-0657
Weimao ZhongSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0000-0002-1358-4944
Longping FuSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0009-0006-4275-3264
Emmanuel AsanteDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado 80210, United States.
Anastasiia KostenkoDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado 80210, United States.
F N U VidyaSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Paige Mandelare-RuizSmithsonian Marine Station, Ft Pierce, Florida 34949, United States.
Tamilore T AdeogunSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Gabriel P AndersonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Benjamin E EdmondsSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Oscar FangSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Michelle HanSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Alia S HollingsworthSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Amna R InghamSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Carlyn R KirbySchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Alice LandrumSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Connor R MackSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Nikki S NobariSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Emma J OswaldSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Cecilia L PolevoySchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Yasmin SharifianSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Timothy J SoSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Joelee R StokesSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Reniya S ThompsonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Rishabh VuthamarajuSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Elaine C WangSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
William H YangSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Alison E OnstineSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.
Valerie J PaulSmithsonian Marine Station, Ft Pierce, Florida 34949, United States.ORCID 0000-0002-4691-1569
Ronghu WuSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0000-0001-9493-9462
Allegra T AronDepartment of Chemistry and Biochemistry, University of Denver, Denver, Colorado 80210, United States.
Vinayak AgarwalSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, United States.ORCID 0000-0002-2517-589X

Funding

Microbiota Metallophores: Probing Interactions and Nutrient Dynamics of the Human GutR35GM155026 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI Allegra Aron · 2024 to 2026
$1.1M
Characterizing extracellular glycoproteins and unraveling their functionsR35GM156318 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Ronghu Wu · 2025 to 2026
$1.0M
National Science Foundation CHE-2238650NIGMS NIH HHS R35 GM155026NIGMS NIH HHS R35 GM156318
6 · The paper itself

Abstract

Conserved biosynthetic gene clusters (BGCs) are often tied to the production of natural products that perform critical functions in an organism's physiology and ecological interactions. Here, by phylogenetic analysis across the bacterial genus, we report the obligate conservation of a BGC in genomes of cosmopolitan marine

Indexed as

CopperGammaproteobacteriaMultigene FamilyGenome, BacterialPhylogenyCopper

Identifiers

PMID40970901
PMCPMC12538549

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.