Evidence map›Paper›PMID 40973787›Full record

ArticleFEMS yeast research2025

The Sef1 transcription factor interacts with promoters of riboflavin structural genes in Candida famata.

Serhii Romanov, Oleksii Lyzak, Andriy Sibirny, Kostyantyn Dmytruk

Abstract read
In one paragraph

Article in FEMS yeast research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Serhii RomanovInstitute of Cell Biology, National Academy of Sciences of Ukraine, 79005 Lviv, Ukraine.
Oleksii LyzakFlanders Institute for Biotechnology/KU Leuven Center for Microbiology, 3001 Leuven, Belgium.
Andriy SibirnyInstitute of Cell Biology, National Academy of Sciences of Ukraine, 79005 Lviv, Ukraine.
Kostyantyn DmytrukInstitute of Cell Biology, National Academy of Sciences of Ukraine, 79005 Lviv, Ukraine.ORCID 0000-0003-3661-8913

Funding

National Research Foundation of Ukraine 2023.03/0035Simons Foundation 1030281Simons Foundation 1290613
6 · The paper itself

Abstract

Riboflavin (RF, vitamin B2) serves as a precursor for the flavin coenzymes FAD and FMN, which are involved in numerous redox reactions in cells. RF is produced on an industrial scale. The yeast Candida famata overproduces RF under iron-starvation conditions, and mutants have been isolated that accumulate large amounts of RF. Overexpression of Sef1, the transcription factor of the zinc cluster family, increases RF production in C. famata; however, the specific mechanism remains unknown. Here, we report that SEF1 expression is upregulated under iron deficiency. We developed a yeast one-hybrid system based on the yeast Saccharomyces cerevisiae to study the role of Sef1 in regulation of RF biosynthesis. We found that Sef1 activates the promoters of the RIB1, RIB3, RIB5, RIB6, and RIB7 genes. Additionally, SEF1 was shown to undergo autoregulation. For the RIB1 promoter, a Sef1-binding sequence has been identified. The ability of Sef1 to activate RIB genes expression was further validated in the native C. famata system.

Indexed as

CandidaFungal ProteinsGene Expression Regulation, FungalPromoter Regions, GeneticRiboflavinTranscription FactorsIron DeficienciesProtein BindingSaccharomyces cerevisiaeTwo-Hybrid System TechniquesFungal ProteinsRiboflavinTranscription Factorsgene expressioniron deficiencyone-hybrid systemriboflavinyeast

Identifiers

PMID40973787
PMCPMC12501418

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.