Evidence map›Paper›PMID 40977901›Full record

ArticleComputational and structural biotechnology journal2025

Statistical modeling of immunoprecipitation efficiency of MeRIP-seq data enabled accurate detection and quantification of epitranscriptome.

Haozhe Wang, Kunqi Chen, Zhen Wei, Bowen Song, Manli Zhu, Jionglong Su, Anh Nguyen, Jia Meng, Yue Wang

Abstract read
In one paragraph

Article in Computational and structural biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haozhe WangJiangsu Key Laboratory for Functional Substance of Chinese Medicine, School of Pharmacy, Nanjing 210023, China.
Kunqi ChenKey Laboratory of Ministry of Education for Gastrointestinal Cancer, School of Basic Medical Sciences, Fujian Medical University, Fuzhou 350004, China.
Zhen WeiDepartment of Biosciences and Bioinformatics, Center for Intelligent RNA Therapeutics, Suzhou Key Laboratory of Cancer Biology and Chronic Disease, School of Science, Suzhou, Jiangsu 215123, China.
Bowen SongDepartment of Public Health, School of Medicine, Nanjing University of Chinese Medicine, Nanjing 210023, China.
Manli ZhuMicrosoft China Co., Ltd., Suzhou, Jiangsu 215123, China.
Jionglong SuSchool of AI and Advanced Computing, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Anh NguyenDepartment of Computer Science, University of Liverpool, Liverpool L7 8TX, United Kingdom.
Jia MengDepartment of Biosciences and Bioinformatics, Center for Intelligent RNA Therapeutics, Suzhou Key Laboratory of Cancer Biology and Chronic Disease, School of Science, Suzhou, Jiangsu 215123, China.
Yue WangJiangsu Key Laboratory for Functional Substance of Chinese Medicine, School of Pharmacy, Nanjing 210023, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Recent advancements in epitranscriptomics highlight reversible RNA modifications as crucial regulators, with N6-methyladenosine (m Results: We develop a comprehensive analytical tool, AEEIP, for estimating the IP efficiency and correcting antibody bias in epitranscriptomics directly, AEEIP employs a mixture model to estimate the proportion of modification-containing RNA fragments from the source of IP data. Validation with both simulated and real data shows that AEEIP successfully estimates antibody bias across different replicates and experimental conditions, and reveals that this bias may obscure the accurate identification of m

Indexed as

Antibody biasEpitranscriptomeImmunoprecipitation efficiencym6AMeRIP-seqMixture model

Identifiers

PMID40977901
PMCPMC12446549

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.