Evidence map›Paper›PMID 40980488›Full record

ArticleEnvironmental epigenetics2025

DNA methylation signatures of arsenic exposure and obesity.

Natália Yumi Noronha, Guilherme da Silva Rodrigues, Lígia Moriguchi Watanabe, Isabella Harumi Yonehara Noma, Jean-Baptiste Cazier, Chanachai Sae-Lee, Pitaksin Chitta, Vanessa Aparecida Batista Pereira, Marcela Augusta de Souza Pinhel, Luísa Maria Diani and 3 more

Abstract read
In one paragraph

Article in Environmental epigenetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Natália Yumi NoronhaDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.ORCID https://orcid.org/0000-0001-9589-8586
Guilherme da Silva RodriguesDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.ORCID https://orcid.org/0000-0002-9931-4709
Lígia Moriguchi WatanabeDepartment of Health Sciences, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.
Isabella Harumi Yonehara NomaDepartment of Clinical and Toxicological Analysis, School of Pharmaceutical Sciences, University of São Paulo, 05508-000, Brazil.
Jean-Baptiste CazierCentre for Computational Biology, University of Birmingham, Birmingham, B15 2TT, United Kingdom.ORCID https://orcid.org/0000-0001-7581-9051
Chanachai Sae-LeeResearch Division, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
Pitaksin ChittaResearch Division, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.
Vanessa Aparecida Batista PereiraDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.
Marcela Augusta de Souza PinhelDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.
Luísa Maria DianiDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.
Fernando Barbosa
Torsten PlöschDepartment of Obstetrics and Gynecology, University Medical Center Groningen, University of Groningen, Groningen, 9700 AB, The Netherlands.
Carla Barbosa NoninoDepartment of Internal Medicine, Ribeirão Preto Medical School, Ribeirão Preto, São Paulo, 14049-900, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Emerging evidence suggests a link between environmental pollution and epigenetic alterations, prompting the need for comprehensive investigations into the relationship between pollutants and health conditions in human populations. This study investigates the interplay between obesity and exposure to toxic metals, examining clinical, serum metal concentrations, and epigenetic signatures. Our approach included serum metal concentration analysis by inductively coupled plasma mass spectrometry and epigenetic analysis using 450k Illumina BeadChips data. Singular value decomposition and linear regression models were used to identify metal associations with DNA methylation. Marked differences were evident in weight, body mass index, glycaemia, High Density Lipoprotein cholesterol (HDL-c), and triglycerides between patients with obesity and without obesity. Metal serum concentrations revealed higher arsenic levels in participants with obesity, while elevated mercury concentrations were found in individuals without obesity. Epigenetic analysis identified 2045 arsenic-associated differentially methylated positions (DMPs) in individuals with obesity, including 57 hypermethylated and 159 hypomethylated sites in promoter regions. These DMPs demonstrated direct associations of arsenic exposure, and traits such as insufficient sleep, smoking, and diseases such as gestational diabetes. Functional enrichment analysis (using traits, gene ontology, and KEGG pathways) highlighted pathways linking obesity and arsenic exposure, specifically the Wnt and TNF signalling pathways. Additionally, hypermethylated sites were linked with cancer, rheumatoid arthritis, and gestational diabetes, emphasizing the intricate relationship between these conditions. Notably,

Indexed as

arsenic exposureDNA methylationmetal serum concentrationsobesitytoxic metal

Identifiers

PMID40980488
PMCPMC12449058

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.