Evidence mapPaperPMID 41008610Full record

ReviewBiomolecules2025

Natural Product-Derived Drugs: Structural Insights into Their Biological Mechanisms.

Yujeong Choi, Younghyun Kim, Hye Joon Boo, Danbi Yoon, Jeong Seok Cha, Jiho Yoo

Abstract readReview
In one paragraph

Review in Biomolecules, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Yujeong ChoiCollege of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.
Younghyun KimCollege of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.
Hye Joon BooCollege of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.
Danbi YoonCollege of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.
Jeong Seok ChaResearch Institute of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.ORCID 0000-0001-7856-1236
Jiho YooCollege of Pharmacy, Chung-Ang University, Seoul 06974, Republic of Korea.ORCID 0000-0002-0864-2142

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Natural product-derived drugs represent a cornerstone of modern pharmacotherapy, with many serving as essential therapeutic agents across diverse medical conditions. Recent advances in structural biology have provided unprecedented insights into the molecular mechanisms underlying their biological activities. This review presents a comprehensive structural analysis of five representative natural product-derived drugs: digoxin, simvastatin, morphine, paclitaxel, and penicillin. Through an examination of high-resolution crystal structures and cryo-electron microscopy (cryo-EM) data, we elucidate how these compounds interact with their respective protein targets and modulate biological functions. The structural data reveal diverse binding mechanisms-ranging from competitive inhibition and covalent modification to allosteric modulation via conformational selection and induced fit-demonstrating how natural products achieve their therapeutic effects through precise molecular recognition. These structural insights provide a molecular foundation for understanding natural product pharmacology and offer valuable guidance for structure-based drug design approaches in developing next-generation therapeutics.

Indexed as

Biological ProductsCryoelectron MicroscopyDigoxinHumansPaclitaxelPenicillinsBiological ProductsDigoxinPaclitaxelPenicillinscryo-EMdrug discoverymolecular mechanismsnatural productsprotein-drug interactionsstructural biologyX-ray crystallography

Identifiers

PMID41008610
PMCPMC12467776

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.