Evidence map›Paper›PMID 41013179›Full record

ArticleBMC genomics2025

Genomic and metabonomic insights into the lignin-degrading potential of a novel halophilic bacterial strain Salinicoccus sp. HZC-1.

Fengqian Yang, Longzhan Gan, Zhicheng He, Haoran Zhang, Yuxin Yang, Chunbo Dong, Xiao Zou

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Fengqian YangInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China.
Longzhan GanInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China. lzgan@gzu.edu.cn.
Zhicheng HeInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China.
Haoran ZhangInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China.
Yuxin YangInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China.
Chunbo DongInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China.
Xiao ZouInstitute of Fungus Resources, Guizhou Key Laboratory of Agricultural Microbiology/Key Laboratory of Plant Resource Conservation and Germplasm Innovation in Mountainous Region (Ministry of Education), College of Life Sciences, Guizhou University, Guiyang, Guizhou Province, 550025, China. xzou@gzu.edu.cn.

Funding

Guizhou Provincial Basic Research Program (Natural Science) No. Qiankehe Foundation-ZK (2024) General 089Guizhou Provincial Department of Education Youth Science and Technology Talent Development Project No. Qianjiaoji (2024) 35National Natural Science Foundation of China No. 32460033Special Project of Natural Science Foundation of Guizhou University No. Gui Da Te Gang He Zi (2023) 16SRT Program of Guizhou University No. 2024-505
6 · The paper itself

Abstract

Lignin-derived aromatic compounds have significant potential for multiple industrial applications, and elucidating the processes for bacterial lignin degradation processes can facilitate the utilization of plant biomass. A lignin-degrading bacterial strain, designated HZC-1, was newly isolated from saline-alkali soil and exhibited robust growth in 1-18% (w/v) NaCl and across a pH range of 5.0-11.0. The isolate showed the highest 16S rRNA gene sequence similarity (≤ 97.7%) to known Salinicoccus species. Furthermore, average nucleotide identity (≤ 82.34) and digital DNA-DNA hybridization (≤ 52.9%) analyses supported its classification as a potentially novel species within the genus Salinicoccus. Genomic annotation indicated that strain HZC-1 adapted to saline-alkali environments via multiple mechanisms such as Na

Indexed as

Genome, BacterialGenomicsLigninMetabolomicsStaphylococcaceaeBiodegradation, EnvironmentalPhylogenyRNA, Ribosomal, 16SSoil MicrobiologyLigninRNA, Ribosomal, 16SComparative genomicsExtremophilesLignin biodegradationNovel speciesSalinicoccus

Identifiers

PMID41013179
PMCPMC12465274

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.