Evidence map›Paper›PMID 41023776›Full record

ArticleBMC genomics2025

Transcriptomic analysis reveals the growth of Populus Schneideri in different light qualities.

Xiaolin Zhang, Rong Xu, Cai Wang, Shaojie Ma, Yulan Xu, Dan Zong

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC genomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xiaolin Zhang *Key Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Rong Xu *Key Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Cai WangKey Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Shaojie MaKey Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Yulan XuKey Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China.
Dan ZongKey Laboratory for Forest Genetics and Tree Improvement and Propagation in, Universities of Yunnan Province, Southwest Forestry University, Kunming, 650224, China. skyzd907@swfu.edu.cn.

Funding

Joint Agricultural Project of Yunnan Province 202101BD070001-127Youth Talents Special Project of Yunnan Province "Xingdian Talents Support Program" XDYC-QNRC-2022-0232
6 · The paper itself

Abstract

backgroundLight plays a key role in plant growth, development and response to adversity. Plants perceive different wavelengths of light in the environment through various photoreceptors and regulate plant growth and development through light signaling. Nevertheless, it remains unknown how high-altitude plants adapt to different light conditions. To elucidate the molecular mechanisms of high-altitude plants responding to light quality, this research compared the transcriptome of P. schneideri cuttings under blue and green film treatments.

resultsBlue film treatment significantly promoted the height growth of P. schneideri, while green film treatment inhibited it, and both treatments significantly suppressed stem thickness growth. Transcriptomic analysis revealed that blue film treatment induced a significantly higher number of differentially expressed genes (DEGs) compared to green film treatment, with multiple transcription factor families (such as WRKY, NAC, bHLH, MIKC, and MYB) down-regulated across various treatments. DEGs were primarily enriched in the hormone signaling pathway, where blue film treatment significantly up-regulated the expression of CRY1, HY5 and ARF8 genes, while down-regulating GH3.1, Aux/IAA14 and Aux/IAA16. In contrast, green film treatment exhibited the opposite regulatory pattern.

conclusionThese results imply that P. schneideri may benefit from blue film treatment in terms of growth and development, which may be helpful for further research into the introduction and cultivation of P. schneideri and other popular species in high-altitude regions.

Indexed as

Gene Expression ProfilingLightPopulusTranscriptomeGene Expression Regulation, PlantPlant ProteinsTranscription FactorsPlant ProteinsTranscription FactorsAuxin response geneGrowth and developmentLight qualityPopulus Schneideri

Identifiers

PMID41023776
PMCPMC12482806

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.