ArticleScientific data2025
Chromosomal-level genome assembly of the autotetraploid Anoectochilus roxburghii (Jinxianlian, Orchidaceae).
Article in Scientific data, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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3 citing papers in PubMed.
- Haplotype-resolved autotetraploid genome of Dioscorea nipponica provides insights into recent polyploidization, metabolic rewiring, and environmental adaptation.The Plant journal : for cell and molecular biology · 2026Article
- Orchid genome evolution and trait innovation.Journal of integrative plant biology · 2026Review
- Transcriptomic and Metabolomic Insights into Tissue- and Cultivar-Dependent Polysaccharide Accumulation inInternational journal of molecular sciences · 2026Article
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8 authors.
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Abstract
Anoectochilus roxburghii (Orchidaceae), commonly known as Jinxianlian, is a highly valued traditional Chinese herbal medicine. Here, we present a high-quality chromosome-level genome assembly of the cultivar 'Jinkang No.1'. Genome survey analyses suggest that the cultivar is an autotetraploid. The assembled genome spans 5.17 Gb, with a contig N50 of 24.90 Mb, and 93.4% (4.82 Gb) is anchored onto 80 pseudo-chromosomes across 20 homologous groups. Annotation of the genome assembly identifies 76.42% repetitive elements and 88,106 protein-coding genes, with 94.6% of these genes functionally annotated. Ks analysis of collinear gene pairs indicates a recent species-specific polyploidization event, likely resulting in autotetraploidization. This reference genome provides a valuable resource for functional genomics, evolutionary biology, and molecular breeding studies of A. roxburghii and its related species.
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