Evidence map›Paper›PMID 41083217›Full record

ArticleAmerican journal of physiology. Cell physiology2025

Response of UBR-box E3 ubiquitin ligases and protein quality control pathways to perturbations in protein synthesis and skeletal muscle size.

Leslie M Baehr, Luis Gustavo Oliveira de Sousa, Craig A Goodman, Adam P Sharples, David S Waddell, Sue C Bodine, David C Hughes

Abstract read
In one paragraph

Article in American journal of physiology. Cell physiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Leslie M BaehrAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States.ORCID 0000-0002-8778-3567
Luis Gustavo Oliveira de SousaAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States.ORCID 0000-0003-1013-2595
Craig A GoodmanCentre for Muscle Research (CMR), Department of Anatomy and Physiology, The University of Melbourne, Melbourne, Victoria, Australia.ORCID 0000-0002-5874-7743
Adam P SharplesInstitute for Physical Performance, Norwegian School of Sport Sciences (NiH), Oslo, Norway.ORCID 0000-0003-1526-9400
David S WaddellDepartment of Biology, University of North Florida, Jacksonville, Florida, United States.ORCID 0000-0001-6749-4461
Sue C BodineAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States.ORCID 0000-0002-5742-9145
David C HughesAging and Metabolism Research Program, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma, United States.ORCID 0000-0002-5433-8782

Funding

Viral sensor IFIH1 promotes SLE through an altered interferon programP20GM139763 · NIGMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI Brian Gene Coon · 2021 to 2026
$20.3M
The role of Fbxl22 in the regulation of skeletal muscle massK01AR077684 · NIAMS · UNIVERSITY OF IOWA · PI HUGHES, DAVID C · 2021 to 2025
$602k
The role of UBR5 in skeletal muscle atrophy and regrowthR03AR083980 · NIAMS · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI HUGHES, DAVID C · 2024 to 2024
$171k
HHS | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) K01AR077684HHS | NIH | National Institute of Arthritis and Musculoskeletal and Skin Diseases (NIAMS) R03AR083980HHS | NIH | National Institute of General Medical Sciences (NIGMS) P20GM139763NIAMS NIH HHS K01 AR077684NIAMS NIH HHS R03 AR083980NIGMS NIH HHS P20 GM139763
6 · The paper itself

Abstract

The N-degron pathway contributes to proteolysis by targeting N-terminal residues of destabilized proteins via E3 ligases that contain a UBR-box domain. Emerging evidence suggests the UBR-box family of E3 ubiquitin ligases (UBR1-7) is involved in the positive regulation of skeletal muscle mass. The purpose of this study was to explore the role of UBR-box E3 ubiquitin ligases under enhanced protein synthesis and skeletal muscle growth conditions. Cohorts of adult male mice were electroporated with constitutively active Akt (Akt-CA) or UBR5 RNAi constructs with a rapamycin diet intervention for 7 and 30 days, respectively. In addition, the UBR-box family was studied during the regrowth phase after nerve crush-induced inactivity. Skeletal muscle growth with Akt-CA or regrowth following inactivity increased protein abundance of UBR1, UBR2, UBR4, UBR5, and UBR7. This occurred with corresponding increases in Akt-mTORC1/S6K and MAPK/p90RSK signaling and protein synthesis. The increases in UBR-box E3s, ubiquitination, and proteasomal activity occurred independently of mTORC1 activity and were associated with increases in markers related to autophagy, ER-stress, and protein quality control pathways. Finally, while UBR5 knockdown (KD) evokes atrophy, it occurs together with hyperactivation of mTORC1 and protein synthesis. In UBR5 KD muscles, we identified an increase in protein abundance for UBR2, UBR4, and UBR7, which may highlight a compensatory response to maintain proteome integrity. Future studies will seek to understand the role of UBR-box E3s toward protein quality control in skeletal muscle plasticity.

Indexed as

Muscle ProteinsMuscle, SkeletalProtein BiosynthesisUbiquitin-Protein LigasesAnimalsMaleMechanistic Target of Rapamycin Complex 1MiceMice, Inbred C57BLProteolysisProto-Oncogene Proteins c-aktSignal TransductionUbiquitinationMechanistic Target of Rapamycin Complex 1Muscle ProteinsProto-Oncogene Proteins c-aktUbiquitin-Protein LigaseshypertrophyN-degron pathwayproteasome systemprotein turnoverUBR5

Identifiers

PMID41083217
PMCPMC12551769

What Socratic holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.