Evidence map›Paper›PMID 41085765›Full record

ArticleCurrent microbiology2025

Genomic and Pathogenic Characterization of Vibrio alginolyticus CG-1 Isolated from Crassostrea gigas.

Hyoun Joong Kim, Kyung-Il Park, Sang Guen Kim

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Article in Current microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Draft genome sequences of eight biofilm-formingMicrobiology resource announcements · 2026
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Hyoun Joong KimDepartment of Aquatic Life Medical Sciences, Sunmoon University, Asan, 31460, Republic of Korea.
Kyung-Il ParkDepartment of Aquatic Life Medicine, College of Ocean Science and Technology, Kunsan National University, 558 Daehakro, Gunsan, 54150, Republic of Korea.
Sang Guen KimLaboratory of Phage and Microbial Resistance, Department of Biological Sciences, Kyonggi University, Suwon, 16227, Republic of Korea. imagine0518@kyonggi.ac.kr.ORCID http://orcid.org/0000-0001-5352-4914

Funding

Korea Institute of Marine Science and Technology promotion RS-2022-KS221679Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries RS-2025-02218213Ministry of Education RS-2021-NR062056
6 · The paper itself

Abstract

The Pacific oyster (Crassostrea gigas) is a species of significant economic importance in global aquaculture. Vibrio alginolyticus, a halophilic marine bacterium widely distributed in coastal environments, is recognized as an opportunistic pathogen in both humans and marine organisms. However, the genomic determinants of V. alginolyticus pathogenicity in oysters remain poorly understood. The strain CG-1 was isolated from diseased Pacific oysters collected during a mortality event in Tongyeong, South Korea. Here, we report the complete genome sequence of strain CG-1, which comprises two circular chromosomes measuring 3,535,696 bp (chromosome I) and 1,806,773 bp (chromosome II), with GC contents of 44.61% (chromosome I) and 44.66% (chromosome II). The genome contains 4,785 protein-coding sequences, 127 tRNA genes, 37 rRNA genes, and one tmRNA. Plasmids were not identified. Functional annotation assigned 96.21% of the coding sequences to clusters of orthologous groups (COG) categories primarily related to metabolism, transcription, and inorganic ion transport. The genome encodes multiple virulence-associated genes including components of the type III secretion system, extracellular enzymes, motility and chemotaxis regulators, outer membrane proteins, iron acquisition systems, and antibiotic resistance genes. A pathogenicity assay revealed that V. alginolyticus CG-1 induced dose-dependent mortality in Pacific oyster larvae, with an LD

Indexed as

CrassostreaGenome, BacterialVibrio alginolyticusAnimalsPhylogenyRepublic of KoreaVirulenceVirulence FactorsVirulence Factors

Identifiers

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.