Evidence map›Paper›PMID 41102416›Full record

SynthesisNature genetics2025

Meta-analysis reveals differences in somatic alterations by genetic ancestry across common cancers.

Setor Amuzu, Amy X Xie, Xuechun Bai, Kelly R Pekala, Nicholas A Pickersgill, David Ma, Tomin Perea-Chamblee, Kanika Arora, Walid K Chatila, Andriy Derkach and 6 more

Abstract readMeta-Analysis
In one paragraph

Synthesis in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. The Landscape of Genomic and Socioeconomic Variables in Patients with Colorectal Cancer Based on Genetic Ancestry.Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology · 2026
    Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Setor Amuzu *Computational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0003-3244-7475
Amy X Xie *Computational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0002-1441-7849
Xuechun BaiComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0009-0001-3868-2786
Kelly R PekalaComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0002-8967-3388
Nicholas A PickersgillUrology Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0001-9902-6603
David MaComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.
Tomin Perea-ChambleeComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.
Kanika AroraComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0001-9537-8708
Walid K ChatilaComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0001-5474-218X
Andriy DerkachDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0003-2178-8493
Ronglai ShenDepartment of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0001-9694-584X
Garrett M FramptonComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.ORCID http://orcid.org/0000-0002-2361-2750
Michael BergerComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0003-3882-5000
Nikolaus SchultzComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA.ORCID http://orcid.org/0000-0002-0131-4904
Justin Y NewbergComputational Discovery, Foundation Medicine, Inc., Cambridge, MA, USA.
Jian Carrot-ZhangComputational Oncology, Department of Epidemiology and Biostatistics, Memorial Sloan Kettering Cancer Center, New York City, NY, USA. carrotj@mskcc.org.ORCID http://orcid.org/0000-0002-0103-9965

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Training and Career Development CoreU54CA132378 · NCI · CITY COLLEGE OF NEW YORK · PI Tim Alan Ahles, ADRIANA ESPINOSA · 2008 to 2026
$28.9M
Training and Career Development and Education CoreU54CA137788 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Daniel Alan Heller · 2008 to 2026
$28.1M
Project 3: Predictors of sensitivity to immunotherapy and targeted treatments based on real world evidenceP01CA275746 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Michael F. Berger · 2024 to 2026
$9.4M
Understanding lung cancer genomics in patients of African ancestryR01CA286469 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI Jian Carrot-Zhang · 2024 to 2026
$3.7M
Genomics of Renal Cancer in Patients of African AncestryR21CA280577 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI TAYLOR, ALISON M., ZHANG, JIAN · 2023 to 2024
$456k
NCI NIH HHS P01 CA275746NCI NIH HHS P30 CA008748NCI NIH HHS R01 CA286469NCI NIH HHS R21 CA280577NCI NIH HHS U54 CA132378NCI NIH HHS U54 CA137788U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) 1R21CA280577U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P01CA275746U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) P30CA008748U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA286469U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U54CA132378U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U54CA137788
6 · The paper itself

Abstract

Genetic similarity of populations (or genetic ancestry) is associated with differences in somatic alterations in cancers. We meta-analyze two targeted panel sequencing cohorts with 275,605 samples from 14 cancer types. Here we find a recurrent depletion of TERT promoter mutations in patients of African and East Asian ancestry across multiple cancers. Several clinically actionable alterations, such as ERBB2 mutations in lung adenocarcinoma and MET mutations in papillary renal cell carcinoma, occur at a higher frequency in patients of non-European ancestry. Furthermore, in both cohorts, we show depletions in total driver alterations in non-European ancestries in multiple cancer types, potentially reflecting biases in current panel-based testing that prioritize established targets derived from predominantly patients of European ancestry. Our study highlights a need to increase population diversity in genomic studies to find new drivers and enhance precision oncology interventions for all populations.

Indexed as

NeoplasmsAsian PeopleBlack PeopleHumansMutationPromoter Regions, GeneticTelomeraseWhite PeopleTelomeraseTERT protein, human

Identifiers

PMID41102416
PMCPMC12597819

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.