Evidence map›Paper›PMID 41117228›Full record

ArticleInsect science2026

Chromosome-scale genome assembly of the South American fruit fly, Anastrepha fraterculus sp.1.

Máximo Rivarola, Claudia A Conte, Pierre Berube, Shu-Huang Chen, M Cecilia Giardini, Alejandra C Scannapieco, Fabián H Milla, María C Soria, Romina M Russo, Juan P Wulff and 6 more

Abstract read
In one paragraph

Article in Insect science, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Microbiology resource announcements · 2026
    Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors.

Máximo RivarolaAPOLO Biotech, Santa Fe, Argentina.
Claudia A ConteInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
Pierre BerubeMcGill Centre, Montreal, Canada.
Shu-Huang ChenMcGill Centre, Montreal, Canada.
M Cecilia GiardiniInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
Alejandra C ScannapiecoConsejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.
Fabián H MillaInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
María C SoriaInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
Romina M RussoInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.
Juan P WulffNorth Carolina State University, Raleigh, North Carolina, USA.
Haig H DjambazianMcGill Centre, Montreal, Canada.
Rolando R PomarConsejo Nacional de Investigaciones Científicas y Técnicas (CONICET), Buenos Aires, Argentina.
Alfred M HandlerU.S. Department of Agriculture, Agricultural Research Service, Center for Medical, Agricultural, and Veterinary Entomology, Gainesville, Florida, USA.ORCID https://orcid.org/0000-0003-2644-6038
Kostas BourtzisInsect Pest Control Section, Joint FAO/IAEA Centre of Nuclear Techniques in Food and Agriculture, Department of Nuclear Sciences and Applications, International Atomic Energy Agency, Vienna, Austria.
Ioannis RagoussisMcGill Centre, Montreal, Canada.
Silvia B LanzavecchiaInstituto de Genética grupo vinculado al IABIMO-CONICET, Instituto Nacional de Tecnología Agropecuaria (INTA), Buenos Aires, Argentina.ORCID https://orcid.org/0000-0001-5965-4082

Funding

Agencia Nacional de Promoción Científica y Técnica PICT 2021-00491Instituto Nacional de Tecnología Agropecuaria PDI087International Atomic Energy Agency Research Contract no. 23402
6 · The paper itself

Abstract

Anastrepha fraterculus is a cryptic species complex with at least eight morphotypes distributed across the Americas. Among them, A. fraterculus sp.1, present in Argentina, is a major pest impacting fresh fruit production. Integrated pest management strategies, including chemical control and trapping, are currently employed to mitigate its effects. Genetic sexing strains of A. fraterculus sp.1 are being evaluated for use in sterile insect technique programs. To support traditional and emerging control methods, this study aimed to enhance the genomic understanding of this morphotype. Individual female and male samples were sequenced using long- and short-read technologies. The female genome (760 Mb) was de novo assembled into 58 scaffolds and the male genome (750 Mb) into 68 scaffolds, with BUSCO completeness scores of 98.8% and 98.7%, respectively. Synteny analysis revealed complete scaffolds of the five autosomes and enabled near-complete reconstruction of the X and Y chromosomes. Gene prediction identified 17 751 and 16 535 protein-coding genes (for female and male genomes, respectively), with repetitive regions representing 46% of both genomes. Additionally, the mitochondrial genome was fully assembled and annotated. This comprehensive genomic resource reveals candidate genes for functional studies, including gene editing and RNA interference, as successfully applied in related tephritid species. These findings lay the foundation for innovative, complementary biocontrol tools against A. fraterculus.

Indexed as

Chromosomes, InsectGenome, InsectTephritidaeAnimalsArgentinaFemaleMaleDipterafruit fly pestmitochondrial genomesterile insect technique (SIT)whole‐genome sequencingY‐chromosome‐specific regions

Identifiers

PMID41117228
PMCPMC13087844

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.