Evidence map›Paper›PMID 41120211›Full record

ArticleLife science alliance2025

DA-Raf synergistically binds to the plasma membrane and Ras to suppress ERK signaling.

Kazunori Takano, Kazuya Tsujita, Akiko Suganami, Takuhiko Nakamura, Emiri Kanno, Yutaka Tamura, Toshiki Itoh, Takeshi Endo

Abstract read
In one paragraph

Article in Life science alliance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kazunori TakanoDepartment of Biology, Graduate School of Science, Chiba University, Chiba, Japan ktakano@faculty.chiba-u.jp.ORCID 0000-0001-9400-8588
Kazuya TsujitaBiosignal Research Center, Kobe University, Kobe, Japan.
Akiko SuganamiDepartment of Bioinformatics, Graduate School of Medicine, Chiba University, Chiba, Japan.
Takuhiko NakamuraDepartment of Biology, Graduate School of Science, Chiba University, Chiba, Japan.
Emiri KannoDepartment of Biology, Graduate School of Science, Chiba University, Chiba, Japan.
Yutaka TamuraDepartment of Bioinformatics, Graduate School of Medicine, Chiba University, Chiba, Japan.
Toshiki ItohBiosignal Research Center, Kobe University, Kobe, Japan.ORCID 0000-0001-6433-1894
Takeshi EndoDepartment of Biology, Graduate School of Science, Chiba University, Chiba, Japan.ORCID 0000-0002-7418-2674

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The small GTPase Ras on the plasma membrane (PM) activates the ERK pathway (Raf-MEK-ERK signaling pathway) to regulate a variety of cellular, physiological, and pathological events. DA-Raf1 (DA-Raf) is a splicing isoform of A-Raf and contains the Ras-binding domain and the Cys-rich domain but lacks the conserved region 2 (CR2) and CR3 containing the kinase domain. Accordingly, DA-Raf dominant-negatively regulates Raf proteins to prevent the Ras-ERK pathway. We elucidate here the mechanisms of how DA-Raf conducts its dominant-negative function on Raf proteins. Because DA-Raf lacks the CR2 and CR3, it was incapable of adopting the autoinhibitory closed conformation and thereby favorable for PM localization. Basic amino acids in DA-Raf Ras-binding domain, and those in the Cys-rich domain, were essential for the interaction with phosphatidylserine in the PM. This interaction favored the cooperative binding of DA-Raf to active Ras, which predominated over that of Raf proteins, leading to the stable PM association of DA-Raf. Consequently, DA-Raf exerts its dominant-negative function on Raf proteins to prevent the Ras-ERK pathway.

Indexed as

Cell MembraneMAP Kinase Signaling SystemProto-Oncogene Proteins A-rafras ProteinsAnimalsHEK293 CellsHumansProtein BindingProto-Oncogene Proteins c-rafraf KinasesProto-Oncogene Proteins A-rafProto-Oncogene Proteins c-rafRaf1 protein, humanraf Kinasesras Proteins

Identifiers

PMID41120211
PMCPMC12540644

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.